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Sample GSM549467 Query DataSets for GSM549467
Status Public on Aug 11, 2010
Title WB-Staph-9549
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 5
gender: Female
ethnicity: African American
illness: Staph
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) DChaussabel@benaroyaresearch.org
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 3.357655 0.256917
ILMN_2055271 1.570243 0.3372859
ILMN_1736007 -6.374073 0.8208169
ILMN_2383229 5.49615 0.173913
ILMN_1806310 -2.120275 0.571805
ILMN_1779670 -3.390187 0.6442688
ILMN_2321282 5.6831 0.1660079
ILMN_1671474 7.041517 0.1370224
ILMN_1772582 -3.619216 0.657444
ILMN_1735698 1.437169 0.3386034
ILMN_1653355 5.488852 0.173913
ILMN_1717783 -4.965464 0.7417655
ILMN_1705025 3.521495 0.2503294
ILMN_1814316 -2.543146 0.5955204
ILMN_2359168 6.128467 0.1594203
ILMN_1731507 3.197556 0.2661397
ILMN_1787689 1.956608 0.3267457
ILMN_1745607 -8.923862 0.9235837
ILMN_2136495 -0.871164 0.4927536
ILMN_1668111 -10.43117 0.9591568

Total number of rows: 48803

Table truncated, full table size 1487 Kbytes.




Supplementary file Size Download File type/resource
GSM549467_4676163067_F_Raw.txt.gz 528.9 Kb (ftp)(http) TXT
Processed data included within Sample table

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