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Sample GSM549456 Query DataSets for GSM549456
Status Public on Aug 11, 2010
Title WB-Staph-9555
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 0
gender: Female
ethnicity: African American
illness: Staph
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) DChaussabel@benaroyaresearch.org
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 4.759122 0.2094862
ILMN_2055271 18.24135 0.03162055
ILMN_1736007 -0.9135096 0.4321476
ILMN_2383229 -2.484877 0.5204216
ILMN_1806310 4.630519 0.2121212
ILMN_1779670 4.983966 0.2055336
ILMN_2321282 14.15478 0.06455863
ILMN_1671474 -4.32208 0.6679842
ILMN_1772582 5.150156 0.2055336
ILMN_1735698 -3.908706 0.6389987
ILMN_1653355 16.48331 0.04347826
ILMN_1717783 -3.923012 0.6416337
ILMN_1705025 -9.849891 0.9459816
ILMN_1814316 -8.493395 0.8998682
ILMN_2359168 -9.564934 0.9380764
ILMN_1731507 2.325913 0.2832675
ILMN_1787689 17.66332 0.03557312
ILMN_1745607 -5.136745 0.7061924
ILMN_2136495 -9.897971 0.9486166
ILMN_1668111 -10.39058 0.9604743

Total number of rows: 48803

Table truncated, full table size 1487 Kbytes.




Supplementary file Size Download File type/resource
GSM549456_4676163064_F_Raw.txt.gz 531.2 Kb (ftp)(http) TXT
Processed data included within Sample table

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