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Status
Public on Dec 07, 2010
Title
Burkitt MPI-139_sty
Sample type
genomic
Source name
Whole tissue of tumor biopsy
Organism
Homo sapiens Characteristics
sample type: tumor
Extracted molecule
genomic DNA
Extraction protocol
QiaAmp DNA Blood Kit
Label
Biotin
Label protocol
As per manufacturer (Affymetrix)
Hybridization protocol
DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
Scan protocol
The Arrays were washed using Affymetrix fluidics stations, and scanned using the Gene Chip Scanner 3000.
Description
Hybridized to 250K_Sty
Data processing
The CEL-Files were analyzed using the BRLMM-algorithm to produce genotype calls, stored in the corresponding CHP-Files.
Submission date
Apr 29, 2010
Last update date
Dec 07, 2010
Contact name
Rene Scholtysik
E-mail(s)
rene.scholtysik@uni-due.de Organization name
University Hospital Essen
Department
IFZ
Street address
Virchowstrasse 173
City
Essen
ZIP/Postal code
45127
Country
Germany
Platform ID
GPL3720 Series (1)
GSE21597 Affymetrix SNP array data for Burkitt lymphoma samples
Data table header descriptions ID_REF VALUE Genotypes: AA, AB, BB, No Call
CONFIDENCE RAS1 Relative allele signal for the data in the first probe group
RAS2 Relative allele signal for the data in the second probe group
P-VALUE AA P-VALUE AB P-VALUE BB P-VALUE NO CALL
Data table ID_REF VALUE CONFIDENCE RAS1 RAS2 P-VALUE AA P-VALUE AB P-VALUE BB P-VALUE NO CALL AFFX-5Q-123
No Call
621.5
0
0
0
0
0
0
AFFX-5Q-456
No Call
634
0
0
0
0
0
0
AFFX-5Q-789
No Call
1415
0
0
0
0
0
0
AFFX-5Q-ABC
No Call
1693.5
0
0
0
0
0
0
AFFX-barcodeA
No Call
258
0
0
0
0
0
0
AFFX-barcodeB
No Call
498.5
0
0
0
0
0
0
AFFX-barcodeC
No Call
112
0
0
0
0
0
0
AFFX-barcodeD
No Call
152.5
0
0
0
0
0
0
AFFX-barcodeE
No Call
177
0
0
0
0
0
0
AFFX-barcodeF
No Call
173
0
0
0
0
0
0
AFFX-barcodeG
No Call
163
0
0
0
0
0
0
AFFX-barcodeH
No Call
169.5
0
0
0
0
0
0
AFFX-barcodeI
No Call
261.5
0
0
0
0
0
0
AFFX-barcodeJ
No Call
263
0
0
0
0
0
0
AFFX-barcodeK
No Call
147
0
0
0
0
0
0
AFFX-barcodeL
No Call
186
0
0
0
0
0
0
AFFX-barcodeM
No Call
167
0
0
0
0
0
0
AFFX-barcodeN
No Call
308
0
0
0
0
0
0
AFFX-barcodeO
No Call
161.5
0
0
0
0
0
0
AFFX-barcodeP
No Call
221
0
0
0
0
0
0
238378 18607 Kbytes .Supplementary file Size Download File type/resource GSM539184_MPI-139_sty.CEL.gz
27.5 Mb
(ftp) (http) CEL
GSM539184_Tumor_MPI-139.chp.gz
3.8 Mb
(ftp) (http) CHP
Processed data included within Sample table Processed data provided as supplementary file
