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GEO accession:
Sample GSM5370161
Query DataSets for GSM5370161
Status
Public on Jun 15, 2021
Title
microRNA-seq from cerebral cortex (ENCLB611HTT)
Sample type
SRA
Source name
Mus musculus strain B6NCrl cerebral cortex tissue
Organism
Mus musculus
Characteristics
tissue_type: cerebral cortex
biomaterial_type: tissue
description: Control cortex Female
biosample encode accession: ENCBS417IYY (SAMN19597568)
Sex: not collected
dev stage: unknown
age: not collected
donor_id: ENCDO956IXV
lab: Ali Mortazavi, UCI
source: MODEL-AD
link: ENCBS417IYY at ENCODE;
https://www.encodeproject.org/ENCBS417IYY/
link: Derived from ENCODE donor ENCDO956IXV;
https://www.encodeproject.org/ENCDO956IXV/
Extracted molecule
total RNA
Extraction protocol
general protocol:
https://www.encodeproject.org/documents/49f43842-5ab4-4aa1-a6f4-2b1234955d93/@@download/attachment/Multiplexed%20miRNA%20Sequencing%20Library%20Generation%20Protocol-3.4.pdf
pipeline protocol:
https://www.encodeproject.org/documents/e3eb2a94-9842-40d6-8153-fdf21e748e24/@@download/attachment/adapter_trimming_2.pdf
Library strategy
miRNA-Seq
Library source
transcriptomic
Library selection
size fractionation
Instrument model
Illumina NextSeq 500
Description
https://www.encodeproject.org/experiments/ENCSR059NOB/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation WT female mouse cerebral cortex microRNA-seq from Mortazavi
experiment encode accession: ENCSR059NOB
assay title: microRNA-seq
assembly: mm10
encode release date: 2020-09-01
lab: Ali Mortazavi, UCI
library encode accession: ENCLB611HTT
size range: <30
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Jun 10, 2021
Last update date
Jul 02, 2021
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL19057
Series (1)
GSE176824
microRNA-seq from cerebral cortex (ENCSR059NOB)
Relations
BioSample
SAMN19597568
SRA
SRX11162290
Named Annotation
GSM5370161_ENCFF567IAW_plus_strand_signal_of_all_reads_mm10.bigWig
Named Annotation
GSM5370161_ENCFF618JBT_minus_strand_signal_of_unique_reads_mm10.bigWig
Named Annotation
GSM5370161_ENCFF640KYY_minus_strand_signal_of_all_reads_mm10.bigWig
Named Annotation
GSM5370161_ENCFF835TFX_plus_strand_signal_of_unique_reads_mm10.bigWig
Supplementary file
Size
Download
File type/resource
GSM5370161_ENCFF152XZK_microRNA_quantifications_mm10.tsv.gz
10.5 Kb
(ftp)
(http)
TSV
GSM5370161_ENCFF567IAW_plus_strand_signal_of_all_reads_mm10.bigWig
8.2 Mb
(ftp)
(http)
BIGWIG
GSM5370161_ENCFF618JBT_minus_strand_signal_of_unique_reads_mm10.bigWig
4.5 Mb
(ftp)
(http)
BIGWIG
GSM5370161_ENCFF640KYY_minus_strand_signal_of_all_reads_mm10.bigWig
8.2 Mb
(ftp)
(http)
BIGWIG
GSM5370161_ENCFF835TFX_plus_strand_signal_of_unique_reads_mm10.bigWig
4.6 Mb
(ftp)
(http)
BIGWIG
GSM5370161_ENCLB611HTT_README.txt.gz
662 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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