|
| Status |
Public on Jun 05, 2021 |
| Title |
CTL1 |
| Sample type |
SRA |
| |
|
| Source name |
whole blood
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: whole blood
disease state: control
gender: female
age: 40
tsh: 3.0
ft4: 1.2
|
| Extracted molecule |
total RNA |
| Extraction protocol |
The venous blood was collected in the PAXgene Blood RNA tube and extracted with the PAXgene Blood RNA Kit.
Ion AmpliSeq Transcriptome Human Gene Expression Kit Catalog Number A26325, A26326, and A26327
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Ion Torrent Proton |
| |
|
| Data processing |
The alignment was made by ION S5 default protocol.
We made a conversion from .bam to fastq through 'samtools fastq'
The compression to bz2 was made through bzip2.
Genome_build: Hg19
Supplementary_files_format_and_content: xlsx file containing the reads of each sample
|
| |
|
| Submission date |
Jun 04, 2021 |
| Last update date |
Jun 06, 2021 |
| Contact name |
Robson José de Almeida |
| Organization name |
Universidade Nove de Julho
|
| Department |
Pós Graduação Stricto Sensu em Medicina
|
| Lab |
Molecular Innovation and Biotechnology Laboratory
|
| Street address |
RUA VERGUEIRO 235 249
|
| City |
SAO PAULO |
| State/province |
SAO PAULO |
| ZIP/Postal code |
01504-001 |
| Country |
Brazil |
| |
|
| Platform ID |
GPL17303 |
| Series (1) |
| GSE176153 |
Differentially Expressed Mitochondrial Circulating mRNA in Hypothyroidism Could Be Useful as a Survivor Biomarker in Nonthyroidal Illness Syndrome |
|
| Relations |
| BioSample |
SAMN19570279 |
| SRA |
SRX11067357 |
