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Sample GSM531198 Query DataSets for GSM531198
Status Public on Apr 08, 2010
Title Puerto Rican 12
Sample type genomic
 
Source name NYHP
Organism Homo sapiens
Characteristics gender: Male
tissue: Peripheral blood
disease state: Healthy control
Extracted molecule genomic DNA
Extraction protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Label biotin
Label protocol standard Illumina protocol
 
Hybridization protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Scan protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Description sample id: D0012663
Data processing Genotyped using Illumina 610-Quad Genotyping BeadChips, which use the SNPs on the 550-v3 Genotyping BeadChip plus an additional 60,000 SNPs for CNV not analyzed in present study. See illumina.com
 
Submission date Apr 07, 2010
Last update date Apr 07, 2010
Contact name Harry Ostrer
E-mail(s) harry.ostrer@nyumc.org
Phone 212-263-5746
Fax 212-263-3477
Organization name NYU Langone Medical Center
Department Department of Pediatrics
Lab Human Genetics Program
Street address 550 First Avenue, MSB 136
City New York
State/province NY
ZIP/Postal code 10016
Country USA
 
Platform ID GPL8887
Series (1)
GSE21248 Genome-wide Patterns of Population Structure and Admixture among Hispanic/Latino Populations

Data table header descriptions
ID_REF
VALUE Genotype: AA,AB,BB,or NC (no call)
D0012663.Score
D0012663.Theta
D0012663.R
D0012663.B Allele Freq
D0012663.Log R Ratio

Data table
ID_REF VALUE D0012663.Score D0012663.Theta D0012663.R D0012663.B Allele Freq D0012663.Log R Ratio
200003 AB 0.9299463 0.4056794 1.037177 0.4627934 -0.3113214
200006 AB 0.787675 0.5042428 1.603741 0.5461584 -0.4110126
200047 AA 0.8612435 0.04896096 0.4926252 0 -0.08457063
200050 BB 0.8331156 0.9917911 1.276157 0.9979622 0.06976622
200052 BB 0.9466458 0.9854034 0.8823394 0.9963477 -0.07568448
200053 AA 0.7493879 0.09165066 1.016522 0.01299471 -0.1236831
200070 AB 0.9705294 0.4943247 0.4897211 0.4960744 -0.09328718
200078 BB 0.6531293 0.9340559 1.590701 0.9920306 -0.2459808
200087 AA 0.9078211 0.04760638 0.8592522 0.009177849 -0.2717256
200091 AB 0.8204677 0.5151392 1.825264 0.4996387 -0.2190814
200096 AB 0.9354096 0.4595012 0.9417776 0.5058463 -0.3995289
200124 AB 0.8902165 0.6120425 1.030236 0.4938127 0.04062618
200199 AB 0.9598788 0.453492 0.7341192 0.4678639 -0.1876277
200240 AA 0.8782917 0.02566355 1.480775 0 0.1411038
200251 AA 0.9409742 0.01582262 0.8881825 0.00357155 -0.1657321
200258 AA 0.7451698 0.04402536 1.457426 0 -0.1958628
200260 BB 0.7948331 1 1.037429 1 -0.3065196
200261 AB 0.8794336 0.6086271 1.463686 0.5674432 0.0289557
200262 AB 0.9256892 0.4536309 0.6889281 0.4950337 -0.09662948
200519 AA 0.8716854 0.002730243 1.738437 0 0.05309993

Total number of rows: 620901

Table truncated, full table size 36875 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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