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Sample GSM531195 Query DataSets for GSM531195
Status Public on Apr 08, 2010
Title Puerto Rican 9
Sample type genomic
 
Source name NYHP
Organism Homo sapiens
Characteristics gender: Male
tissue: Peripheral blood
disease state: Healthy control
Extracted molecule genomic DNA
Extraction protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Label biotin
Label protocol standard Illumina protocol
 
Hybridization protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Scan protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Description sample id: D0010760
Data processing Genotyped using Illumina 610-Quad Genotyping BeadChips, which use the SNPs on the 550-v3 Genotyping BeadChip plus an additional 60,000 SNPs for CNV not analyzed in present study. See illumina.com
 
Submission date Apr 07, 2010
Last update date Apr 07, 2010
Contact name Harry Ostrer
E-mail(s) harry.ostrer@nyumc.org
Phone 212-263-5746
Fax 212-263-3477
Organization name NYU Langone Medical Center
Department Department of Pediatrics
Lab Human Genetics Program
Street address 550 First Avenue, MSB 136
City New York
State/province NY
ZIP/Postal code 10016
Country USA
 
Platform ID GPL8887
Series (1)
GSE21248 Genome-wide Patterns of Population Structure and Admixture among Hispanic/Latino Populations

Data table header descriptions
ID_REF
VALUE Genotype: AA,AB,BB,or NC (no call)
D0010760.Score
D0010760.Theta
D0010760.R
D0010760.B Allele Freq
D0010760.Log R Ratio

Data table
ID_REF VALUE D0010760.Score D0010760.Theta D0010760.R D0010760.B Allele Freq D0010760.Log R Ratio
200003 AA 0.9299463 0.01852502 1.158698 0 0.05458428
200006 BB 0.787675 0.9911436 1.669146 1 0.07742794
200047 AB 0.8612435 0.3613018 0.4595402 0.4991003 -0.01992049
200050 AB 0.8331156 0.4068855 2.364908 0.4582622 0.3519442
200052 AB 0.9466458 0.5786092 1.113768 0.5226879 0.04567152
200053 AB 0.7493879 0.4308991 1.125215 0.4730999 -0.1138687
200070 AA 0.9705294 0 0.4036871 0 -0.2630703
200078 AB 0.6531293 0.5094154 2.648687 0.4815942 0.1418184
200087 AB 0.9078211 0.593851 1.078699 0.5530802 -0.2479937
200091 AB 0.8204677 0.4705387 2.084342 0.4545549 0.00268164
200096 BB 0.9354096 0.9628598 0.8357197 1 -0.1984793
200124 AB 0.8902165 0.6256528 1.04967 0.5088841 0.06543947
200199 BB 0.9598788 0.9973461 0.658647 0.9981785 -0.083541
200240 AA 0.8782917 0.02942638 1.504063 0.002252518 0.1613558
200251 AA 0.9409742 0.01288612 1.068912 0.0007779789 0.1038418
200258 AB 0.7451698 0.4118897 1.959473 0.4627656 -0.009657432
200260 AB 0.7948331 0.7832977 1.125785 0.5640865 -0.1007446
200261 AB 0.8794336 0.5608669 1.390369 0.510718 -0.0759677
200262 AB 0.9256892 0.4328067 0.6319272 0.4715937 -0.2128237
200519 AA 0.8716854 0.006192808 2.004003 0 0.2551892

Total number of rows: 620901

Table truncated, full table size 36123 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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