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Sample GSM53108 Query DataSets for GSM53108
Status Public on Jul 01, 2005
Title Breast - 29235
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.5
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Pathological T: 1c
Pathological N: 0(i-)
Pathological M: X
Pathological Stage: Unknown
Pathological Grade: 2
Primary Site: Breast
Histology: Ductal Carcinoma
 
Submission date Jun 30, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1484.9 P 0.000446
AFFX-BioB-M_at 2478.4 P 4.4e-005
AFFX-BioB-3_at 1399.4 P 5.2e-005
AFFX-BioC-5_at 4412 P 4.4e-005
AFFX-BioC-3_at 4921.7 P 4.4e-005
AFFX-BioDn-5_at 10694.2 P 4.4e-005
AFFX-BioDn-3_at 16394.2 P 4.4e-005
AFFX-CreX-5_at 47750.3 P 4.4e-005
AFFX-CreX-3_at 54676.1 P 4.4e-005
AFFX-DapX-5_at 1540.5 P 9.5e-005
AFFX-DapX-M_at 2615.5 P 0.000662
AFFX-DapX-3_at 4084 P 5.2e-005
AFFX-LysX-5_at 210.4 P 0.002275
AFFX-LysX-M_at 313.6 P 0.012547
AFFX-LysX-3_at 649.6 P 7e-005
AFFX-PheX-5_at 257.9 P 0.00039
AFFX-PheX-M_at 314.8 P 0.002273
AFFX-PheX-3_at 431.8 P 0.000509
AFFX-ThrX-5_at 287.4 P 0.002275
AFFX-ThrX-M_at 523.1 P 4.4e-005

Total number of rows: 54675

Table truncated, full table size 1453 Kbytes.




Supplementary file Size Download File type/resource
GSM53108.CEL.gz 7.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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