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GEO accession:
Sample GSM52954
Query DataSets for GSM52954
Status
Public on Jun 10, 2005
Title
TAF1 in HeLa cell, 30 minutes - rep3 of 3
Sample type
genomic
Channel 1
Source name
Chromatin immunoprecipitated DNA using TAF1 antibody
Organism
Homo sapiens
Extracted molecule
genomic DNA
Channel 2
Source name
input DNA
Organism
Homo sapiens
Extracted molecule
genomic DNA
Description
Genome-wide location analysis of TAF1 binding using RenLab ENCODE PCR tiling array. Array ID is ENC486. Replicate 3 of 3.
Submission date
Jun 07, 2005
Last update date
Jun 24, 2005
Contact name
Chunxu Qu
E-mail(s)
qchunxu@ucsd.edu
Phone
(858)822-5767
Organization name
Ludwig Institute for Cancer Research
Department
Gene Regulation
Lab
RenLab
Street address
City
San Diego
State/province
CA
ZIP/Postal code
92093
Country
USA
Platform ID
GPL1454
Series (1)
GSE2730
ENCODE: GWLA analysis of a few promoter and enhancer markers in HeLa cells
Data table header descriptions
ID_REF
VALUE
log2 ratio
STATISTICS
X-statistics
P-VAL
p-value calculated using single array error model
F635_INT
normalized F635 intensity with background intensity as well as blank intensity subtracted
F532_INT
normalized F532 intensity witn background intensity as well as blank intensity subtracted
F635_MEDIAN
F635 median intensity
F635_MEAN
F635 mean intensity
F635_SD
F635 standard deviation
B635_MEDIAN
B635 median intensity
B635_MEAN
B635 mean intensity
B635_SD
B635 standard deviation
F532_MEDIAN
F532 median intensity
F532_MEAN
F532 mean intensity
F532_SD
F532 standard deviation
B532_MEDIAN
B532 median intensity
B532_MEAN
B532 mean intensity
B532_SD
B532 standard deviation
Data table
ID_REF
VALUE
STATISTICS
P-VAL
F635_INT
F532_INT
F635_MEDIAN
F635_MEAN
F635_SD
B635_MEDIAN
B635_MEAN
B635_SD
F532_MEDIAN
F532_MEAN
F532_SD
B532_MEDIAN
B532_MEAN
B532_SD
1
0.153622
5.06700172e-02
2.67493138e-01
721.8583
648.9439
1561
1486
666
82
97
69
1379
1286
520
227
231
60
2
0.184983
6.77913037e-02
2.03255697e-01
1223.3866
1076.1633
2098
2101
744
86
99
70
1692
1694
583
226
229
58
3
-0.274658
-1.08920758e-01
9.08839820e-01
2922.6365
3535.5338
4077
4020
874
86
102
73
3867
3711
774
232
236
59
4
0.030412
1.16084108e-02
4.43486533e-01
1248.9420
1222.8895
2141
2138
637
85
100
70
1838
1830
481
229
232
71
5
0.048785
1.92135057e-02
4.07005997e-01
1593.4122
1540.4313
2496
2529
572
83
97
68
2123
2109
451
231
234
59
6
0.197458
6.86218965e-02
2.00392982e-01
870.9672
759.5579
1608
1664
678
87
99
69
1488
1401
503
226
231
58
7
0.319143
1.11110439e-01
8.68429252e-02
569.7485
456.6797
1286
1295
439
86
103
70
1079
1065
274
227
231
58
8
-0.259594
-1.02596990e-01
8.95481036e-01
1869.5053
2238.0624
2828
2856
633
92
109
77
2760
2712
508
230
234
65
9
0.097117
3.13410887e-02
3.50583465e-01
495.7026
463.4322
1136
1199
524
89
105
79
1078
1080
350
233
238
60
10
0.182802
5.78900823e-02
2.39219279e-01
226.4224
199.4760
530
583
262
84
103
77
525
524
130
227
229
61
11
0.293868
9.98916284e-02
1.10647783e-01
761.2236
620.9392
1413
1540
638
92
109
86
1189
1261
419
232
241
68
12
-0.031456
-1.23371716e-02
5.60035201e-01
4266.5681
4360.6178
5960
5525
1729
89
113
180
4765
4331
1237
235
244
106
13
0.039457
1.56865305e-02
4.23844238e-01
1669.1488
1624.1173
2520
2624
569
87
105
78
2139
2191
327
234
238
60
14
0.406683
1.21580433e-01
6.82895369e-02
739.6561
557.9639
1584
1514
822
92
106
74
1183
1189
567
229
231
58
15
0.412114
1.28674043e-01
5.75697050e-02
576.5156
433.2638
1334
1307
587
89
107
76
1140
1040
382
233
263
663
16
0.094032
3.52249997e-02
3.33124766e-01
1151.6991
1079.0277
2029
2019
662
90
106
71
1745
1714
481
243
245
59
17
0.155094
6.18124652e-02
2.24572110e-01
2069.3930
1858.4672
3013
3098
629
88
102
71
2380
2396
329
238
241
60
18
0.222300
6.23966681e-02
2.22434935e-01
320.8120
274.9993
855
895
459
87
100
67
751
784
267
232
235
58
19
0.136526
5.35021326e-02
2.56205110e-01
2588.5705
2354.8403
3718
3716
961
89
105
73
2898
2802
726
236
240
61
20
0.117971
4.30022531e-02
2.99261041e-01
1112.3686
1025.0284
1972
1968
711
90
107
75
1679
1652
570
231
234
57
Total number of rows:
25392
Table truncated, full table size
2807 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM52954.gpr.gz
2.1 Mb
(ftp)
(http)
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