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Sample GSM52954 Query DataSets for GSM52954
Status Public on Jun 10, 2005
Title TAF1 in HeLa cell, 30 minutes - rep3 of 3
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA using TAF1 antibody
Organism Homo sapiens
Extracted molecule genomic DNA
 
Channel 2
Source name input DNA
Organism Homo sapiens
Extracted molecule genomic DNA
 
 
Description Genome-wide location analysis of TAF1 binding using RenLab ENCODE PCR tiling array. Array ID is ENC486. Replicate 3 of 3.
 
Submission date Jun 07, 2005
Last update date Jun 24, 2005
Contact name Chunxu Qu
E-mail(s) qchunxu@ucsd.edu
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL1454
Series (1)
GSE2730 ENCODE: GWLA analysis of a few promoter and enhancer markers in HeLa cells

Data table header descriptions
ID_REF
VALUE log2 ratio
STATISTICS X-statistics
P-VAL p-value calculated using single array error model
F635_INT normalized F635 intensity with background intensity as well as blank intensity subtracted
F532_INT normalized F532 intensity witn background intensity as well as blank intensity subtracted
F635_MEDIAN F635 median intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532 standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation

Data table
ID_REF VALUE STATISTICS P-VAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD
1 0.153622 5.06700172e-02 2.67493138e-01 721.8583 648.9439 1561 1486 666 82 97 69 1379 1286 520 227 231 60
2 0.184983 6.77913037e-02 2.03255697e-01 1223.3866 1076.1633 2098 2101 744 86 99 70 1692 1694 583 226 229 58
3 -0.274658 -1.08920758e-01 9.08839820e-01 2922.6365 3535.5338 4077 4020 874 86 102 73 3867 3711 774 232 236 59
4 0.030412 1.16084108e-02 4.43486533e-01 1248.9420 1222.8895 2141 2138 637 85 100 70 1838 1830 481 229 232 71
5 0.048785 1.92135057e-02 4.07005997e-01 1593.4122 1540.4313 2496 2529 572 83 97 68 2123 2109 451 231 234 59
6 0.197458 6.86218965e-02 2.00392982e-01 870.9672 759.5579 1608 1664 678 87 99 69 1488 1401 503 226 231 58
7 0.319143 1.11110439e-01 8.68429252e-02 569.7485 456.6797 1286 1295 439 86 103 70 1079 1065 274 227 231 58
8 -0.259594 -1.02596990e-01 8.95481036e-01 1869.5053 2238.0624 2828 2856 633 92 109 77 2760 2712 508 230 234 65
9 0.097117 3.13410887e-02 3.50583465e-01 495.7026 463.4322 1136 1199 524 89 105 79 1078 1080 350 233 238 60
10 0.182802 5.78900823e-02 2.39219279e-01 226.4224 199.4760 530 583 262 84 103 77 525 524 130 227 229 61
11 0.293868 9.98916284e-02 1.10647783e-01 761.2236 620.9392 1413 1540 638 92 109 86 1189 1261 419 232 241 68
12 -0.031456 -1.23371716e-02 5.60035201e-01 4266.5681 4360.6178 5960 5525 1729 89 113 180 4765 4331 1237 235 244 106
13 0.039457 1.56865305e-02 4.23844238e-01 1669.1488 1624.1173 2520 2624 569 87 105 78 2139 2191 327 234 238 60
14 0.406683 1.21580433e-01 6.82895369e-02 739.6561 557.9639 1584 1514 822 92 106 74 1183 1189 567 229 231 58
15 0.412114 1.28674043e-01 5.75697050e-02 576.5156 433.2638 1334 1307 587 89 107 76 1140 1040 382 233 263 663
16 0.094032 3.52249997e-02 3.33124766e-01 1151.6991 1079.0277 2029 2019 662 90 106 71 1745 1714 481 243 245 59
17 0.155094 6.18124652e-02 2.24572110e-01 2069.3930 1858.4672 3013 3098 629 88 102 71 2380 2396 329 238 241 60
18 0.222300 6.23966681e-02 2.22434935e-01 320.8120 274.9993 855 895 459 87 100 67 751 784 267 232 235 58
19 0.136526 5.35021326e-02 2.56205110e-01 2588.5705 2354.8403 3718 3716 961 89 105 73 2898 2802 726 236 240 61
20 0.117971 4.30022531e-02 2.99261041e-01 1112.3686 1025.0284 1972 1968 711 90 107 75 1679 1652 570 231 234 57

Total number of rows: 25392

Table truncated, full table size 2807 Kbytes.




Supplementary file Size Download File type/resource
GSM52954.gpr.gz 2.1 Mb (ftp)(http) GPR

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