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Sample GSM52459 Query DataSets for GSM52459
Status Public on Jun 03, 2005
Title trimethylated K4 histone 3 in HeLa cell, 0 minute - rep3 of 3
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA using trimethyl-H3K4 antibody
Organism Homo sapiens
Extracted molecule genomic DNA
 
Channel 2
Source name input DNA
Organism Homo sapiens
Extracted molecule genomic DNA
 
 
Description Genome-wide location analysis of trimethyl-H3K4 binding using RenLab ENCODE PCR tiling array. Array ID is ENC774. Replicate 3 of 3.
 
Submission date May 25, 2005
Last update date Jun 24, 2005
Contact name Chunxu Qu
E-mail(s) qchunxu@ucsd.edu
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL1454
Series (1)
GSE2730 ENCODE: GWLA analysis of a few promoter and enhancer markers in HeLa cells

Data table header descriptions
ID_REF
VALUE log2 ratio
STATISTICS X-statistics
P-VAL p-value calculated using single array error model
F635_INT normalized F635 intensity with background intensity as well as blank intensity subtracted
F532_INT normalized F532 intensity witn background intensity as well as blank intensity subtracted
F635_MEDIAN F635 median intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532 standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation

Data table
ID_REF VALUE STATISTICS P-VAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD
1 0.932626 3.28502525e-01 5.97386651e-03 855.82979 448.37240 1066 1082 342 77 104 113 1391 1404 278 355 364 110
2 0.727677 2.50561558e-01 2.76009265e-02 975.18208 588.88873 1237 1263 499 81 102 84 1693 1629 509 353 358 101
3 -0.346724 -1.29299772e-01 8.38765079e-01 1504.28027 1912.94803 2183 2202 770 77 101 95 3913 3851 932 351 359 102
4 0.140786 5.31725291e-02 3.42050472e-01 1026.67096 931.21591 1413 1447 403 82 102 83 2205 2177 542 357 360 109
5 0.285140 1.06108192e-01 2.08414640e-01 1232.54680 1011.50433 1685 1691 510 79 100 83 2412 2312 647 363 365 104
6 0.650723 2.30596071e-01 3.88231446e-02 1211.47703 771.66377 1575 1604 555 80 100 84 1891 1909 599 352 357 101
7 1.388721 4.31078223e-01 4.85861667e-04 835.71202 319.16122 979 994 413 78 98 81 1183 1178 336 351 359 101
8 -0.433004 -1.62871136e-01 8.93669466e-01 818.56121 1105.09194 1207 1233 432 78 105 96 2482 2464 430 354 363 110
9 0.021827 7.29066432e-03 4.77755433e-01 299.48922 294.99216 515 542 252 82 102 83 1120 1125 250 359 367 109
10 0.943803 2.48909558e-01 2.84132436e-02 232.37550 120.80290 512 522 254 86 108 101 683 686 194 362 375 140
11 0.812739 2.63464135e-01 2.18992604e-02 587.04875 334.20696 745 802 392 86 107 98 1179 1199 332 347 356 109
12 0.356861 1.31453809e-01 1.57237192e-01 1967.59979 1536.42353 2892 2717 960 83 112 116 3363 3184 929 351 363 114
13 0.265239 9.85087125e-02 2.25489597e-01 772.32085 642.61788 1086 1081 396 87 111 104 1728 1723 351 358 369 109
14 0.986917 3.11784902e-01 8.52189041e-03 991.08366 500.05599 1245 1243 601 84 107 87 1414 1491 587 359 363 101
15 1.209483 3.42670032e-01 4.36957463e-03 902.26375 390.16016 1044 1102 537 85 105 81 1257 1302 744 353 356 99
16 0.441500 1.54293291e-01 1.18872034e-01 653.11033 480.92986 870 920 388 89 110 94 1506 1459 384 358 364 105
17 0.472421 1.74507024e-01 9.08860286e-02 1031.96432 743.79261 1369 1401 426 90 114 121 1936 1877 464 359 368 114
18 1.301872 3.67763979e-01 2.44561740e-03 504.23473 204.51741 708 739 368 87 105 79 958 975 320 363 370 99
19 0.084375 3.19304205e-02 4.03487655e-01 1115.68950 1052.31046 1590 1572 497 86 112 102 2446 2371 553 356 363 109
20 0.050291 1.86564258e-02 4.43240653e-01 773.77355 747.26539 1085 1110 373 85 106 87 1928 1899 462 361 370 106

Total number of rows: 25392

Table truncated, full table size 2848 Kbytes.




Supplementary file Size Download File type/resource
GSM52459.gpr.gz 2.3 Mb (ftp)(http) GPR
GSM52459_532.tif.gz 60.0 Mb (ftp)(http) TIFF
GSM52459_635.tif.gz 55.9 Mb (ftp)(http) TIFF

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