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| Status |
Public on Mar 26, 2021 |
| Title |
UM2_3 [scADT-seq] |
| Sample type |
SRA |
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| Source name |
Uveal Melanoma
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| Organism |
Homo sapiens |
| Characteristics |
tissue: Uveal Melanoma
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
Feature Barcoding with Biolegend TotalSeq-A antibodies
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| Library strategy |
OTHER |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina NovaSeq 6000 |
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| Description |
Antibody Derived Tag
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| Data processing |
Library strategy: single cell ADT-seq
sample de-multiplexing and alignment was performed using Cell Ranger Single Cell Software Suite (v3.0.2)
Genome_build: GRCh38
Supplementary_files_format_and_content: Processed files are filtered contigs annotations files which are given by Cellranger pipeline.
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| Submission date |
Mar 25, 2021 |
| Last update date |
Mar 26, 2021 |
| Contact name |
Paul Gueguen |
| E-mail(s) |
paul.gueguen@unil.ch
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| Organization name |
Institut Curie
|
| Department |
Inserm U932
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| Street address |
26 rue D'Ulm
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| City |
Paris |
| ZIP/Postal code |
75005 |
| Country |
France |
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| Platform ID |
GPL24676 |
| Series (2) |
| GSE169605 |
Splicing patterns in SF3B1 mutated uveal melanoma generate shared immunogenic tumor-specific neo-epitopes [scADT-seq] |
| GSE169610 |
Splicing patterns in SF3B1 mutated uveal melanoma generate shared immunogenic tumor-specific neo-epitopes |
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| Relations |
| BioSample |
SAMN18489550 |
| SRA |
SRX10442188 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM5210609_UM2_3_filtered_feature_bc_matrix.tar.gz |
38.2 Mb |
(ftp)(http) |
TAR |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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