|
| Status |
Public on Jan 11, 2022 |
| Title |
CNS_T_cells_Bat3_cko |
| Sample type |
SRA |
| |
|
| Source name |
classical dendritic cells
|
| Organism |
Mus musculus |
| Characteristics |
cell type: classical dendritic cells
strain: C57BL/6
treatment: EAE
genotype: Bat3fl/fl CD11cCre
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Collagenase IV, Dnase I digestion, sorting
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina Genome Analyzer II |
| |
|
| Description |
SI-GA-C8
|
| Data processing |
Cellranger 2.0 aligned to mm10
Genome_build: mm10
Supplementary_files_format_and_content: h5 Expression Matrices
|
| |
|
| Submission date |
Mar 24, 2021 |
| Last update date |
Jan 11, 2022 |
| Contact name |
Ayshwarya Subramanian |
| E-mail(s) |
subraman@broadinstitute.org
|
| Organization name |
Broad Institute
|
| Department |
Klarman Cell Observatory
|
| Street address |
415 Main Street
|
| City |
Cambridge |
| State/province |
MA |
| ZIP/Postal code |
02142 |
| Country |
USA |
| |
|
| Platform ID |
GPL9250 |
| Series (2) |
| GSE169530 |
Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and Bat3-/- BMDC Transcriptomes I |
| GSE169664 |
Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and Bat3-/- BMDC Transcriptomes |
|
| Relations |
| BioSample |
SAMN18474098 |
| SRA |
SRX10436301 |
