NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM519620 Query DataSets for GSM519620
Status Public on Sep 30, 2010
Title hASC_t6_rep1
Sample type RNA
 
Source name hASC pre-adipocyte, day 5
Organism Homo sapiens
Characteristics gender: female
cell type: adipose stromal cells
Treatment protocol N/A
Growth protocol hASCs were grown in MesenPRO RS medium (Invitrogen) plus 4ng/ml FGF-2 on plates coated with 10ug/cm2 collagen I (Invitrogen). Two days after confluence, the cells were placed in induction medium (DMEM/F12 supplemented with 10% FBS plus 1uM dexamethasone, 1.7uM insulin, 0.5mM IBMX, 5uM rosiglitazone, 40ng/ml BMP4, 17uM pantothenic acid, and 33uM biotin). 72h later, the medium was replaced with maintenance medium (DMEM/F12 with 10% FBS plus 1uM dexamethasone, 1.7uM insulin, 17uM pantothenic acid, and 33uM biotin) and media was replaced every two days thereafter.
Extracted molecule total RNA
Extraction protocol Total RNA were extracted using TRIzol (Invitrogen) and subjected to miRNA-DASL
Label Cy3
Label protocol As recommended by Illumina
 
Hybridization protocol As recommended by Illumina
Scan protocol As recommended by Illumina
Description no additional information
Data processing The data were extracted, background subtracted and quantile normalzied using GenomeStudio 2009 (Illumina)
 
Submission date Mar 09, 2010
Last update date Sep 07, 2010
Contact name Tarjei S Mikkelsen
Organization name Broad Institute
Street address 7 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platform ID GPL8178
Series (2)
GSE20699 MicroRNA expression profiling of human adipose stromal cell (hASC) adipogenesis
GSE20752 Comparative Epigenomic Analysis of Murine and Human Adipogenesis

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_3167304 -36.13844 0.8713704
ILMN_3168038 -10.92792 0.6886935
ILMN_3167890 28282.7 3.68E-38
ILMN_3167526 28.54577 0.3046403
ILMN_3167209 -22.4016 0.7834101
ILMN_3167213 24.54577 0.3411092
ILMN_3167057 1498.809 3.68E-38
ILMN_3168313 -12.71739 0.7045841
ILMN_3166972 -13.71739 0.7132985
ILMN_3168149 13.22998 0.4515131
ILMN_3168527 -23.4016 0.7907935
ILMN_3167562 -20.24371 0.766974
ILMN_3168099 216.0195 6.62E-08
ILMN_3168017 45.70366 0.1717734
ILMN_3167951 145.9142 0.000237876
ILMN_3167172 -2.454233 0.6090276
ILMN_3167994 -5.770022 0.6409722
ILMN_3166997 4.756294 0.537257
ILMN_3166980 -12.29634 0.7008788
ILMN_3168362 57.49314 0.1062322

Total number of rows: 734

Table truncated, full table size 22 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap