|
| Status |
Public on Jul 06, 2021 |
| Title |
RB45 (methylation) |
| Sample type |
genomic |
| |
|
| Source name |
retinoblastoma sample RB45
|
| Organism |
Homo sapiens |
| Characteristics |
sentrix_id: 8795207024
sentrix_position: R02C02
batch: 1
project_id: PJ1210143
geo dataset serie sample id: SAMPLE 36
tissue: retinoblastoma
|
| Treatment protocol |
NA
|
| Growth protocol |
NA
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
For DNA extraction, samples were first incubated in a lysis buffer with proteinase K, recombinant. They were next incubated with RNAse A. DNA was then extracted using a standard phenol-chloroform protocol.
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
Standard Illumina Protocol
|
| Scan protocol |
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
| Description |
Genome methylation data from retinoblastoma samples
Methylation_processed_data.RData
Methylation_raw_data.RData
format_data_for_GEO_submission_methylation_data_retino.R
Raw_data_i_methylation_retino_all_samples.csv
processed_data_i_methylation_retino_all_samples.csv
Sample name in the .csv files: SAMPLE 32
|
| Data processing |
R Software, MinFi R package
Average Beta
|
| |
|
| Submission date |
Mar 01, 2021 |
| Last update date |
Jul 06, 2021 |
| Contact name |
Elodie chapeaublanc |
| E-mail(s) |
elodie.chapeaublanc@pasteur.fr
|
| Organization name |
Institut Curie
|
| Department |
UMR 144
|
| Lab |
Equipe Radvanyi
|
| Street address |
26 rue d'ulm
|
| City |
paris |
| ZIP/Postal code |
75248 |
| Country |
France |
| |
|
| Platform ID |
GPL13534 |
| Series (2) |
| GSE58783 |
Retinoblastoma genome methylation data |
| GSE58785 |
Pan-genomic study of primary human retinoblastoma samples |
|
