 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Dec 26, 2020 |
| Title |
200517480077_R05C01 |
| Sample type |
genomic |
| |
|
| Source name |
Liver tissue
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: liver
gender: female
bmi: 23
ecocardio: Positive
age, etiology, meld: 47, HCV, 14
fvc: 99
fev1: 106
fev1/fvc: 84
dlco_va: 34
disease state: HPS
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted and purified from liver blocks with the Recover All kit following the instructions
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human EPIC 850K using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
DNA from PF block
Meld = Model for End-stage Liver Disease
|
| Data processing |
BeadStudio software v3.2
|
| |
|
| Submission date |
Dec 10, 2020 |
| Last update date |
Dec 28, 2020 |
| Contact name |
Nuria Mendoza |
| E-mail(s) |
nmendoza@clinic.cat
|
| Organization name |
IDIBAPS
|
| Lab |
606
|
| Street address |
C/Casanova 143, cellex 2 A
|
| City |
Barcelona |
| ZIP/Postal code |
08036 |
| Country |
Spain |
| |
|
| Platform ID |
GPL21145 |
| Series (1) |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
M values |
| Data table |
| ID_REF |
VALUE |
| cg14817997 |
2.107472686 |
| cg14008030 |
1.574175586 |
| cg02404219 |
0.86157098 |
| cg03130891 |
-1.837696226 |
| cg16382250 |
2.491835068 |
| cg24335620 |
0.857954605 |
| cg24669183 |
0.978676764 |
| cg17308840 |
-1.647377349 |
| cg17866181 |
1.912218452 |
| cg08477687 |
-2.70790903 |
| cg00645010 |
-3.890430603 |
| cg27534567 |
-2.963426076 |
| cg01070250 |
-2.581095034 |
| cg24063007 |
-5.136564335 |
| cg11380914 |
0.321150012 |
| cg10692041 |
1.243638211 |
| cg02339369 |
0.652076697 |
| cg16535257 |
0.547849759 |
| cg15979415 |
0.178096167 |
| cg11304639 |
-0.826175387 |
Total number of rows: 461189
Table truncated, full table size 10476 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM4969771_200517480077_R05C01_Grn.idat.gz |
6.9 Mb |
(ftp)(http) |
IDAT |
| GSM4969771_200517480077_R05C01_Red.idat.gz |
7.0 Mb |
(ftp)(http) |
IDAT |
| Processed data included within Sample table |
|
|
|
|
 |
