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| Status |
Public on Dec 26, 2020 |
| Title |
200517480077_R01C01 |
| Sample type |
genomic |
| |
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| Source name |
Liver tissue
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| Organism |
Homo sapiens |
| Characteristics |
tissue: liver
gender: male
bmi: 30
ecocardio: No eco
age, etiology, meld: 59, Alcohol, 16
fvc: 94
fev1: 106
fev1/fvc: 87
dlco_va: 80
disease state: Control
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted and purified from liver blocks with the Recover All kit following the instructions
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| Label |
Cy5 and Cy3
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| Label protocol |
Standard Illumina Protocol
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| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human EPIC 850K using standard Illumina protocol
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| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
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| Description |
DNA from PF block
Meld = Model for End-stage Liver Disease
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| Data processing |
BeadStudio software v3.2
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| Submission date |
Dec 10, 2020 |
| Last update date |
Dec 28, 2020 |
| Contact name |
Nuria Mendoza |
| E-mail(s) |
nmendoza@clinic.cat
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| Organization name |
IDIBAPS
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| Lab |
606
|
| Street address |
C/Casanova 143, cellex 2 A
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| City |
Barcelona |
| ZIP/Postal code |
08036 |
| Country |
Spain |
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| Platform ID |
GPL21145 |
| Series (1) |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
M values |
| Data table |
| ID_REF |
VALUE |
| cg14817997 |
2.686973824 |
| cg14008030 |
1.718845073 |
| cg02404219 |
1.979870613 |
| cg03130891 |
-1.517143953 |
| cg16382250 |
1.947936787 |
| cg24335620 |
1.271604889 |
| cg24669183 |
1.870567339 |
| cg17308840 |
-0.942492992 |
| cg17866181 |
3.084019087 |
| cg08477687 |
-1.907677449 |
| cg00645010 |
-3.202836266 |
| cg27534567 |
-3.017130987 |
| cg01070250 |
-3.291223098 |
| cg24063007 |
-4.825772385 |
| cg11380914 |
0.986049288 |
| cg10692041 |
1.725348055 |
| cg02339369 |
1.077851337 |
| cg16535257 |
0.030960031 |
| cg15979415 |
0.227302473 |
| cg11304639 |
-1.695252441 |
Total number of rows: 461189
Table truncated, full table size 10486 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM4969768_200517480077_R01C01_Grn.idat.gz |
6.9 Mb |
(ftp)(http) |
IDAT |
| GSM4969768_200517480077_R01C01_Red.idat.gz |
7.0 Mb |
(ftp)(http) |
IDAT |
| Processed data included within Sample table |
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