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| Status |
Public on Dec 26, 2020 |
| Title |
200517480058_R08C01 |
| Sample type |
genomic |
| |
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| Source name |
Liver tissue
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| Organism |
Homo sapiens |
| Characteristics |
tissue: liver
gender: male
bmi: 24
ecocardio: Positive
age, etiology, meld: 41, HCV, 14
fvc: 117
fev1: 106
fev1/fvc: 72
dlco_va: 37
disease state: HPS
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted and purified from liver blocks with the Recover All kit following the instructions
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| Label |
Cy5 and Cy3
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| Label protocol |
Standard Illumina Protocol
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| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human EPIC 850K using standard Illumina protocol
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| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
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| Description |
DNA from PF block
Meld = Model for End-stage Liver Disease
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| Data processing |
BeadStudio software v3.2
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| Submission date |
Dec 10, 2020 |
| Last update date |
Dec 28, 2020 |
| Contact name |
Nuria Mendoza |
| E-mail(s) |
nmendoza@clinic.cat
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| Organization name |
IDIBAPS
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| Lab |
606
|
| Street address |
C/Casanova 143, cellex 2 A
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| City |
Barcelona |
| ZIP/Postal code |
08036 |
| Country |
Spain |
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| Platform ID |
GPL21145 |
| Series (1) |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
M values |
| Data table |
| ID_REF |
VALUE |
| cg14817997 |
1.8689998 |
| cg14008030 |
1.860660369 |
| cg02404219 |
1.985576725 |
| cg03130891 |
-1.938020493 |
| cg16382250 |
1.70156566 |
| cg24335620 |
1.628191503 |
| cg24669183 |
1.219899424 |
| cg17308840 |
-1.558963133 |
| cg17866181 |
2.24250273 |
| cg08477687 |
-2.078564062 |
| cg00645010 |
-3.566231959 |
| cg27534567 |
-2.960051154 |
| cg01070250 |
-3.411057281 |
| cg24063007 |
-4.352480477 |
| cg11380914 |
0.840230041 |
| cg10692041 |
1.619435238 |
| cg02339369 |
1.227466086 |
| cg16535257 |
-0.120918423 |
| cg15979415 |
0.05157772 |
| cg11304639 |
-1.026558101 |
Total number of rows: 461189
Table truncated, full table size 10482 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM4969767_200517480058_R08C01_Grn.idat.gz |
7.0 Mb |
(ftp)(http) |
IDAT |
| GSM4969767_200517480058_R08C01_Red.idat.gz |
7.0 Mb |
(ftp)(http) |
IDAT |
| Processed data included within Sample table |
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