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| Status |
Public on Dec 26, 2020 |
| Title |
200514040133_R03C01 |
| Sample type |
genomic |
| |
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| Source name |
Liver tissue
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| Organism |
Homo sapiens |
| Characteristics |
tissue: liver
gender: male
bmi: 31
ecocardio: Positive
age, etiology, meld: 50,Alcohol, 14
fvc: 85
fev1: 90
fev1/fvc: 89
dlco_va: 44
disease state: HPS
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted and purified from liver blocks with the Recover All kit following the instructions
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| Label |
Cy5 and Cy3
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| Label protocol |
Standard Illumina Protocol
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| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human EPIC 850K using standard Illumina protocol
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| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
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| Description |
DNA from PF block
Meld = Model for End-stage Liver Disease
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| Data processing |
BeadStudio software v3.2
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| Submission date |
Dec 10, 2020 |
| Last update date |
Dec 28, 2020 |
| Contact name |
Nuria Mendoza |
| E-mail(s) |
nmendoza@clinic.cat
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| Organization name |
IDIBAPS
|
| Lab |
606
|
| Street address |
C/Casanova 143, cellex 2 A
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| City |
Barcelona |
| ZIP/Postal code |
08036 |
| Country |
Spain |
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| Platform ID |
GPL21145 |
| Series (1) |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
M values |
| Data table |
| ID_REF |
VALUE |
| cg14817997 |
1.931889121 |
| cg14008030 |
1.18968763 |
| cg02404219 |
1.581779339 |
| cg03130891 |
-1.740107383 |
| cg16382250 |
2.035386985 |
| cg24335620 |
1.049845986 |
| cg24669183 |
1.764806436 |
| cg17308840 |
-1.941432649 |
| cg17866181 |
2.595423586 |
| cg08477687 |
-1.884667235 |
| cg00645010 |
-3.338083486 |
| cg27534567 |
-2.821391512 |
| cg01070250 |
-3.033789304 |
| cg24063007 |
-4.671659193 |
| cg11380914 |
0.280388751 |
| cg10692041 |
1.632640364 |
| cg02339369 |
1.004784181 |
| cg16535257 |
-0.85173249 |
| cg15979415 |
0.250151593 |
| cg11304639 |
-1.820720151 |
Total number of rows: 461189
Table truncated, full table size 10487 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM4969761_200514040133_R03C01_Grn.idat.gz |
6.9 Mb |
(ftp)(http) |
IDAT |
| GSM4969761_200514040133_R03C01_Red.idat.gz |
7.0 Mb |
(ftp)(http) |
IDAT |
| Processed data included within Sample table |
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