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Sample GSM492352 Query DataSets for GSM492352
Status Public on Mar 01, 2010
Title Peripheral Whole Blood 105243
Sample type genomic
 
Source name genomic DNA from whole blood 105243
Organism Homo sapiens
Characteristics sample type: bi-sulphite converted genomic whole blood DNA from Case
agegroupatsampledraw: 70 to 75
ageatrecruitment: 74
ageatdiagnosis: 74
histology: Serous
stage: IIIb
grade: Grade 3
pre-treatment sample: No
post-treatment sample: Yes
ca125: 23.37
batch: 9
beadchip_well: 4447820162_E
bs conversion c1: Grn 8636
bs conversion c2: Grn 8682
Extracted molecule genomic DNA
Extraction protocol DNA was extracted at Tepnel (www.tepnel.com) using a chloroform extraction method and 800ng DNA from each sample was bisulphite converted using the EZ DNA Methylation Kit D5008 (Zymo Research, Orange, CA, USA)
Label as per Illumina Infinium 27k methylation assay protocol
Label protocol A single base extension was performed using labelled DNP- and biotin labelled dNTPs. See the Illumina Infinium 27k methylation assay protocol.
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation27 Beadchip
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended scanner setting
Description whole blood from cases are from postmenopausal women with ovarian cancer, drawn either before or after treatment
Data processing BeadStudio software v3.2
 
Submission date Dec 31, 2009
Last update date Mar 01, 2010
Contact name Andrew E Teschendorff
E-mail(s) a.teschendorff@ucl.ac.uk
Phone +44 02076790727
Organization name University College London
Department UCL Cancer Institute/Institute for Women's Health
Street address 72 Huntley Street
City London
ZIP/Postal code WC1E 6BT
Country United Kingdom
 
Platform ID GPL8490
Series (1)
GSE19711 Genome wide DNA methylation profiling of United Kingdom Ovarian Cancer Population Study (UKOPS)

Data table header descriptions
ID_REF IlmnID
VALUE M/(U+M+100)

Data table
ID_REF VALUE
cg00000292 0.8451425
cg00002426 0.8738245
cg00003994 0.05211535
cg00005847 0.1165463
cg00006414 0.07171533
cg00007981 0.02732021
cg00008493 0.9601272
cg00008713 0.0482045
cg00009407 0.05003488
cg00010193 0.6178001
cg00011459 0.8971145
cg00012199 0.03994404
cg00012386 0.02086993
cg00012792 0.02175889
cg00013618 0.8651446
cg00014085 0.03088611
cg00014837 0.8498304
cg00015770 0.115339
cg00016968 0.7778935
cg00019495 0.2452607

Total number of rows: 27578

Table truncated, full table size 576 Kbytes.




Supplementary file Size Download File type/resource
GSM492352.txt.gz 451.5 Kb (ftp)(http) TXT
Processed data included within Sample table

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