 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Oct 27, 2020 |
| Title |
mouse, T cells |
| Sample type |
SRA |
| |
|
| Source name |
mouse colorectal cancer
|
| Organism |
Mus musculus |
| Characteristics |
cell type: T cells
cancer type: colorectal cancer
protocol: 10X Chromium 5' RNA-seq + TCR
|
| Extracted molecule |
total RNA |
| Extraction protocol |
none provided by the submitter
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
single-cell RNA-seq and TCR calling
|
| Data processing |
cell_ranger-3.1.0
Genome_build: human: GRCh38-3.0.0, mouse: mm10-3.0.0
Supplementary_files_format_and_content: barcodes.tsv: cell barcodes
Supplementary_files_format_and_content: features.tsv: gene names
Supplementary_files_format_and_content: matrix.mtx: count matrix
|
| |
|
| Submission date |
Sep 30, 2020 |
| Last update date |
Oct 27, 2020 |
| Contact name |
Paula Nieto |
| E-mail(s) |
nietogarciapaula@gmail.com
|
| Organization name |
CNAG
|
| Department |
CNAG
|
| Lab |
Single-Cell Genomics
|
| Street address |
Barcelona Science Park, Carrer de Baldiri Reixac, 4, tower I, 08028 Barcelona
|
| City |
Barcelona |
| State/province |
Spain |
| ZIP/Postal code |
08028 |
| Country |
Spain |
| |
|
| Platform ID |
GPL24247 |
| Series (1) |
| GSE158803 |
A Single-Cell Tumor Immune Atlas for Precision Oncology |
|
| Relations |
| BioSample |
SAMN16302962 |
| SRA |
SRX9219167 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM4810696_mouse_Tcell_TCR_filtered_contig_annotations.csv.gz |
21.5 Kb |
(ftp)(http) |
CSV |
| GSM4810696_mouse_Tcell_barcodes.tsv.gz |
15.7 Kb |
(ftp)(http) |
TSV |
| GSM4810696_mouse_Tcell_features.tsv.gz |
272.8 Kb |
(ftp)(http) |
TSV |
| GSM4810696_mouse_Tcell_matrix.mtx.gz |
6.9 Mb |
(ftp)(http) |
MTX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
|
|
|
|
 |
