|
| Status |
Public on Aug 31, 2020 |
| Title |
CTL_41 |
| Sample type |
SRA |
| |
|
| Source name |
whole blood
|
| Organism |
Homo sapiens |
| Characteristics |
diagnosis: Healthy pregnancy
tissue: Whole blood
age: 28
gestational age: 41.4
tsh: 2.57
ft4: 0.93
sbp: 110
dbp: 70
|
| Extracted molecule |
total RNA |
| Extraction protocol |
The venous blood was collected in PAXgene Blood RNA tube and extracted with the PAXgene Blood RNA Kit.
Ion AmpliSeq Transcriptome Human Gene Expression Kit Catalog Number A26325, A26326, and A26327.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Ion Torrent Proton |
| |
|
| Description |
Matrix_Pregnant_CTL_versus_Pregnant_Pre_Eclampsia.xlsx
|
| Data processing |
The alignment was made by ION S5 default protocol.
We made a conversion from .bam to fastq through 'samtools fastq'.
The compression to bz2 was made through bzip2.
Genome_build: hg18 (NCBI36)
Supplementary_files_format_and_content: Matrix_Pregnant_CTL_versus_Pregnant_Pre_Eclampsia.xlsx: Excel file containing the reads of each sample.
|
| |
|
| Submission date |
Aug 30, 2020 |
| Last update date |
Aug 31, 2020 |
| Contact name |
Robson José de Almeida |
| Organization name |
Universidade Nove de Julho
|
| Department |
Pós Graduação Stricto Sensu em Medicina
|
| Lab |
Molecular Innovation and Biotechnology Laboratory
|
| Street address |
RUA VERGUEIRO 235 249
|
| City |
SAO PAULO |
| State/province |
SAO PAULO |
| ZIP/Postal code |
01504-001 |
| Country |
Brazil |
| |
|
| Platform ID |
GPL17303 |
| Series (1) |
| GSE157148 |
Expression of the olfactory receptors OR6X1 and OR4E2 decreases in hypothyroidism and is reversible with levothyroxine treatment in pregnancy |
|
| Relations |
| BioSample |
SAMN15944087 |
| SRA |
SRX9037997 |
