Strain: C57BL6 Prostate, Male total RNA (MoPr.Male) received from National Human Genome Research Institute was analyzed through Bioanalyzer and passed our quality control test. The mRNA was processed according to the MPSS protocol as outlined in the previous publications (Brenner, S., et al. (2000) Proc Natl Acad Sci U S A 97(4): 1665-1670 and Brenner, S. et al., Nat. Biotechnol 18(6): 630-634). Briefly, the mRNA was reverse transcribed and the cDNA was digested with Dpn II. The 20 bases adjacent to the 3? most Dpn II site was cloned into a Megaclone vector. The resulting library was amplified and loaded onto microbeads. About 1.6 million microbeads were loaded into each flow cell and the signature sequences were determined by a series of enzymatic reactions as outlined in the above publications. The abundance for each signature was converted to transcripts per million (tpm) for the purpose of comparisons between samples. Cells/tissue: Library MoPr.Male.sig21 Cell type Prostate, Male Source NHGRI RNA isolation LYNX mRNA QC passed cDNA library: Library DpnII restriction - (signature cloning using MmeI) Sequence length 20 bp MPSS: runs MoPr.Male_sig21.5314F.c-20 1/24/2005 551963 7282 QC Passed MoPr.Male_sig21.5314F.d-20 1/28/2005 406873 5625 QC Passed MoPr.Male_sig21.5314W.c-20 1/31/2005 476782 3453 QC Passed MoPr.Male_sig21.5314W.d-20 1/31/2005 374776 3452 QC Passed MoPr.Male_sig21.5314W.h-20 3/14/2005 538288 4593 QC Passed Run group: Total Beads successfully sequenced - 2348682 Processed Signatures - 8206
