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Sample GSM467433 Query DataSets for GSM467433
Status Public on Mar 01, 2010
Title RT_0_13_126_WCO1_Mus_Li
Sample type RNA
 
Source name Sample Type: tissue, Tissue: Liver, Tissue Harvest Methods: Tissue was excised from animal, minced, placed in RNA later, and stored at -80 degrees Centigrade, Harvest Time Point: 13, Units of Harvest Time Point: weeks
Organism Mus musculus
Characteristics amount to core: 15
units of amount: ul
od260: 12.018
od280: 6.478
ratio: 1.88
dilution: 1:10
rna integrity number: 7.2
bioanalyzer results: Good
sample preservation: RNA later
strain or line: B6C3F1
individual: 126
developmental state: Adult
sacrifice method: Pentobarbital (5.2 mg/kg) and exsanguination
gender: Female
age: 18
units of age: weeks
in vivo treatment: Distilled Water
treatment repeat: 1
units of treatment repeat: per day
treatment duration: 13
units of duration: weeks
treatment time: 5
units of treatment time: days/wk
vehicle for chemical: Distilled water
amount of vehicle: 5
route of exposure: Gavage
units of amount of vehicle: ml/kg
dose or concentration: 0
units of dose or concentration: mg/kg
Biomaterial provider R. Thomas, The Hamner Institutes for Health Sciences, 6 Davis Dr, RTP, NC, 27709, R. Thomas, rthomas@thehamner.org, 919 558 1311, 919 558 1300
Treatment protocol in vivo Treatment: Distilled Water, Treatment Repeat: 1, Units of Treatment Repeat: per day, Treatment Duration: 13, Units of Duration: weeks, Treatment Time: 5, Units of Treatment Time: days/wk, Vehicle for Chemical: Distilled water, Amount of Vehicle: 5, Route of Exposure: Gavage, Units of Amount of Vehicle: ml/kg, Dose or Concentration: 0, Units of Dose or Concentration: mg/kg
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description RT_0_13_126_WCO1_Mus_Li_Mouse430_2_RSTLRI601_1
Data processing Affymetrix GCOS 1.0
 
Submission date Nov 03, 2009
Last update date Nov 18, 2009
Contact name Russell Scott Thomas
E-mail(s) rthomas@thehamner.org
Phone 919-558-1311
Fax 919-558-1300
Organization name The Hamner Institutes for Health Sciences
Street address 6 Davis Drive
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1261
Series (1)
GSE18858 Transcriptional Biomarkers to Predict Female Mouse Liver Tumors in Rodent Cancer Bioassays - A 26 Chemical Set

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 515.979 P 0.000662269
AFFX-BioB-M_at 1221.15 P 6.02111e-05
AFFX-BioB-3_at 673.928 P 5.16732e-05
AFFX-BioC-5_at 631.143 P 0.000126798
AFFX-BioC-3_at 723.874 P 6.02111e-05
AFFX-BioDn-5_at 4932.45 P 4.42873e-05
AFFX-BioDn-3_at 7954.92 P 4.42873e-05
AFFX-CreX-5_at 25517.4 P 4.42873e-05
AFFX-CreX-3_at 31770.4 P 4.42873e-05
AFFX-DapX-5_at 630.523 P 5.16732e-05
AFFX-DapX-M_at 1410.52 P 0.000224668
AFFX-DapX-3_at 1905.3 P 5.16732e-05
AFFX-LysX-5_at 107.178 P 0.000126798
AFFX-LysX-M_at 187.901 P 0.00556451
AFFX-LysX-3_at 598.159 P 0.000146581
AFFX-PheX-5_at 134.285 P 9.4506e-05
AFFX-PheX-M_at 186.738 P 0.000340305
AFFX-PheX-3_at 243.923 P 0.00687065
AFFX-ThrX-5_at 198.957 P 0.00618711
AFFX-ThrX-M_at 230.92 P 0.000146581

Total number of rows: 45101

Table truncated, full table size 1377 Kbytes.




Supplementary file Size Download File type/resource
GSM467433.CEL.gz 3.6 Mb (ftp)(http) CEL
GSM467433.CHP.gz 5.2 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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