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Sample GSM466 Query DataSets for GSM466
Status Public on Jul 24, 2001
Title REF-vjr (red, channel 2) vs N2 #1 L3 (green, channel 1)
Sample type RNA
 
Channel 1
Source name N2 #1 L3 (green, channel 1)
Organism Caenorhabditis elegans
Extracted molecule total RNA
 
Channel 2
Source name REF-vjr (red, channel 2)
Organism Caenorhabditis elegans
Extracted molecule total RNA
 
 
Description Category: germline
Subcategory: L3
Experimental details: synchronized wild type L3 mRNA (batch 1) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_11038
 
Submission date Jul 24, 2001
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL14
Series (1)
GSE5 Global profile of germline gene expression in C. elegans

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 172 171 980 394 239 160 155 99 152 251 .758 0 -2.688 .201 78 60 4.1 6.445 .244 .155 .275 988 161 67 82 1769 1784 -2.688
2 181 180 4 159 5 163 154 98 3 101 .122 -100 1.138 24 12 .8 1.257 1.25 .795 .223 581 79 973 984 1781 1792 -.331
3 184 177 230 304 140 171 164 104 89 193 .752 0 -1.369 .622 66 42 1.643 2.582 .609 .387 .566 603 121 87 100 1768 1781 -1.369
4 185 182 34 174 27 156 147 94 17 111 .548 0 -.985 1.545 32 27 1.259 1.979 .794 .505 .563 562 79 993 1004 1781 1792 -.985
5 188 183 60 224 62 170 162 103 39 143 .641 0 -.605 1.933 13 23 .968 1.521 1.033 .657 .674 589 121 108 121 1768 1781 -.605
6 186 184 85 215 72 154 143 91 46 137 .784 0 -.892 1.5 31 31 1.181 1.856 .847 .539 .648 526 79 1013 1024 1783 1794 -.892
7 193 193 448 701 545 168 156 99 347 446 .908 0 -.37 1.123 82 72 .822 1.292 1.217 .774 1.23 749 161 126 141 1768 1783 -.37
8 185 184 184 348 190 165 158 101 121 221 .912 0 -.606 1.135 77 49 .968 1.522 1.033 .657 1.07 644 121 1030 1043 1782 1795 -.606
9 188 184 1340 345 194 161 151 96 123 219 .619 0 -3.441 .116 88 51 6.907 10.857 .145 .092 .175 758 161 147 162 1769 1784 -3.441
10 189 188 494 240 85 161 155 99 54 153 .64 0 -3.191 .232 93 27 5.812 9.135 .172 .109 .316 606 121 1051 1064 1784 1797 -3.191
11 181 179 173 333 183 159 150 95 116 212 .82 -100 1.507 46 38 .945 1.486 1.058 .673 .866 534 121 169 182 1769 1782 -.571
12 188 188 408 532 376 164 156 99 239 338 .909 0 -.77 .871 85 56 1.085 1.706 .922 .586 .928 622 161 1071 1086 1782 1797 -.77
13 172 169 1824 1280 1126 162 154 98 716 814 .938 0 -1.348 .589 86 75 1.62 2.546 .617 .393 .658 971 181 517 533 1775 1791 -1.348
14 259 180 117 1092 937 244 155 99 596 695 .857 -100 .722 15 26 .125 .196 8.009 5.095 3.035 1017 161 1416 1431 1784 1799 2.349
15 177 173 6631 2495 2342 163 153 97 1490 1587 .943 0 -2.154 .359 74 75 2.831 4.45 .353 .225 .386 895 232 535 553 1775 1793 -2.154
16 183 183 236 524 348 187 176 112 221 333 .868 0 -.092 1.698 52 33 .678 1.066 1.475 .938 1.412 663 121 1440 1453 1787 1800 -.092
17 181 177 430 1853 1698 163 155 99 1080 1179 .972 0 1.329 3.803 66 78 .253 .398 3.949 2.512 3.777 788 213 557 574 1775 1792 1.329
18 187 186 320 772 602 179 170 108 383 491 .914 0 .259 1.743 74 77 .532 .836 1.881 1.197 1.923 672 161 1457 1472 1784 1799 .259
19 179 176 671 912 756 163 156 99 481 580 .895 0 -.48 1.151 87 84 .888 1.395 1.127 .717 .965 923 261 575 594 1775 1794 -.48
20 189 188 2064 2142 1975 171 167 106 1257 1363 .963 0 -.716 .943 86 83 1.045 1.643 .957 .609 1.002 613 161 1476 1491 1784 1799 -.716

Total number of rows: 13323

Table truncated, full table size 1631 Kbytes.




Supplementary data files not provided

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