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Sample GSM455139 Query DataSets for GSM455139
Status Public on Oct 09, 2009
Title Hi-C (HindIII,K562,1) 7
Sample type SRA
Source name K562
Organism Homo sapiens
Characteristics cell line: K562
restriction enzyme: HindIII
biological sample #: 4
pcr # from biological sample: 1
lane: 1
read end: 1,2
Growth protocol Human cell line GM06990, an EBV-transformed lymphoblastoid cell line (Coriell, Camden, NJ), was cultured in RPMI1640, 15% fetal calf serum, 1% penicillin-streptomycin, and 2mM L-glutamine. Human erythroleukemia cell line K562 (ATCC, Manassas, VA) was cultured in DMEM, 10% fetal calf serum, 1% penicillinstreptomycin, and 2mM L-glutamine.
Extracted molecule genomic DNA
Extraction protocol Hi-C approach as described in the paper
Library strategy OTHER
Library source genomic
Library selection other
Instrument model Illumina Genome Analyzer
Description contains both read ends
Data processing Independent alignment of both ends of each read using Maq (
Submission date Sep 21, 2009
Last update date May 15, 2019
Contact name Erez Lieberman-Aiden
Organization name Harvard/MIT/Broad
Street address 7 Cambridge Circle
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
Platform ID GPL9052
Series (1)
GSE18199 Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
SRA SRX011614
BioSample SAMN00003929

Supplementary file Size Download File type/resource
GSM455139_428EGAAXX.7.maq.hic.summary.binned.txt.gz 222.8 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA
Processed data is available on Series record

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