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Sample GSM452679 Query DataSets for GSM452679
Status Public on May 05, 2010
Title NaCl8.6g_AcR_F4_5h
Sample type RNA
 
Source name AcR, NaCl, F4, 5h
Organism Zymomonas mobilis
Characteristics strain: AcR
phenotype: sodium acetate-tolerant
treatment: sodium chloride
treatment time: 5h
fermentor: F4
Biomaterial provider ORNL
Treatment protocol Cultured in media containing sodium chloride at 8.6 grams/liter.
Growth protocol Z. mobilis ZM4 was obtained from the American Type Culture Collection (ATCC31821) and cultured in RM medium at 30°C.
Extracted molecule total RNA
Extraction protocol RNA was isolated from samples which were harvested by centrifugation. The TRIzol reagent (Invitrogen, Carlsbad, CA) was used to extract total cellular RNA.
Label Cy3
Label protocol Nimblegen internal protocols were followed
 
Hybridization protocol Nimblegen internal protocols were followed
Scan protocol Nimblegen internal protocols were followed
Description 2166502
Data processing Data was normalized using the Loess normalization analytical process in the JMP Genomics 4.0 Package from SAS Institute
 
Submission date Sep 14, 2009
Last update date May 05, 2010
Contact name Stan Martin
Organization name Science Apps, L3C
Street address 1404 Crete Dr.
City Raleigh
State/province NC
ZIP/Postal code 27606
Country USA
 
Platform ID GPL9192
Series (1)
GSE18106 Genome changes associated with a Zymomonas mobilis sodium acetate-tolerant mutant (AcR)

Data table header descriptions
ID_REF ID in platform
VALUE normalized values

Data table
ID_REF VALUE
10 10.521509613
11 10.562484225
12 10.65872018
13 9.4873848792
14 9.5968476558
15 9.4413776136
16 10.172345604
17 10.247624067
18 10.137047213
19 10.618862785
20 10.573244789
21 10.684221707
22 9.4128192537
23 9.4884933441
24 9.4404261306
25 9.9279609173
26 9.9304391848
27 9.9031994097
28 11.885877568
29 12.040325422

Total number of rows: 5850

Table truncated, full table size 101 Kbytes.




Supplementary file Size Download File type/resource
GSM452679.calls.gz 71.6 Kb (ftp)(http) CALLS
GSM452679.pair.gz 4.9 Mb (ftp)(http) PAIR
Processed data included within Sample table

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