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Sample GSM437155 Query DataSets for GSM437155
Status Public on Nov 14, 2009
Title MCC Patient 63
Sample type RNA
 
Source name Moffitt Cancer Center
Organism Homo sapiens
Characteristics age: 38
gender: female
ethnicity: caucasian
ajcc_stage: 2
grade: 2 - Moderately differentiated (MD)
overall_event (death from any cause): no death
dss_event (disease specific survival; death from cancer): no death
dfs_event (disease free survival; cancer recurrence): no recurrence
overall survival follow-up time: 37.67
dss_time: 37.67
dfs_time: 17.95
Extracted molecule total RNA
Extraction protocol RNA was extracted using the Qiagen RNeasy kit.
Label biotin
Label protocol Standard Affymetrix protocols were used.
 
Hybridization protocol Standard Affymetrix protocols for hybridization to the Affy HGU133 2.0 plus array were used.
Scan protocol GeneChip Scanner was used for scanning and generating the raw .CEL files.
Description Gene expression
Data processing Bioconductor's affy package was used for RMA normalization and raw data processing using default settings for background correction and normalization. Cox regression hazards model was applied to the processed data using the survival package. All analyses were performed using R software.
 
Submission date Aug 06, 2009
Last update date May 30, 2011
Contact name Pengcheng Lu
E-mail(s) pengcheng.lu@vanderbilt.edu
Organization name Vanderbilt University
Street address 2200 Pierce Avenue
City Nashville
State/province TN
ZIP/Postal code 37232
Country USA
 
Platform ID GPL570
Series (2)
GSE17536 Metastasis Gene Expression Profile Predicts Recurrence and Death in Colon Cancer Patients (Moffitt Samples)
GSE17538 Experimentally Derived Metastasis Gene Expression Profile Predicts Recurrence and Death in Colon Cancer Patients
Relations
Reanalyzed by GSM734152
Reanalyzed by GSM734217

Data table header descriptions
ID_REF
VALUE RMA normalized signal intensity

Data table
ID_REF VALUE
1007_s_at 10.86402874
1053_at 8.813217563
117_at 7.665795859
121_at 9.730226094
1255_g_at 5.025196815
1294_at 7.975777744
1316_at 6.74766913
1320_at 7.004846275
1405_i_at 8.513006323
1431_at 5.268195047
1438_at 7.630403018
1487_at 8.330232346
1494_f_at 7.197404161
1552256_a_at 8.982389109
1552257_a_at 9.758364556
1552258_at 7.143210919
1552261_at 6.484956631
1552263_at 7.697247951
1552264_a_at 8.532733231
1552266_at 7.048479211

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM437155.CEL.gz 8.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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