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Sample GSM432992 Query DataSets for GSM432992
Status Public on Mar 26, 2010
Title Patient_24
Sample type RNA
 
Source name CD138 selected plasma cells
Organism Homo sapiens
Characteristics patient: 24
disease state: multiple myeloma
cell type: CD138+ selected plasma cells
risk score: -0.272503777930968
proliferation index: 4.20230173336758
Extracted molecule total RNA
Extraction protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described in PMID: 17105813
Label biotin
Label protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105813
 
Hybridization protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105814
Scan protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105815
Description Gene expression data from CD138+ selected plasma cells
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Jul 24, 2009
Last update date Mar 26, 2010
Contact name Yiming Zhou
E-mail(s) yzhou@uams.edu
Phone (501)296-1503 1413
Organization name Myeloma Institute for Research and Therapy
Street address 4301 West Markham St., Slot 776
City Little Rock
State/province AR
ZIP/Postal code 72205
Country USA
 
Platform ID GPL570
Series (1)
GSE17306 Plasma cells from 52 patients with multiple myeloma: mRNA and miRNA expression profiling

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity

Data table
ID_REF VALUE
AFFX-BioB-5_at 7.888134388
AFFX-BioB-M_at 8.35974956
AFFX-BioB-3_at 7.463524373
AFFX-BioC-5_at 9.29186137
AFFX-BioC-3_at 9.631540867
AFFX-BioDn-5_at 10.44397954
AFFX-BioDn-3_at 11.96650545
AFFX-CreX-5_at 13.18340277
AFFX-CreX-3_at 13.12452524
AFFX-DapX-5_at 4.137503524
AFFX-DapX-M_at 4.329123596
AFFX-DapX-3_at 3.263034406
AFFX-LysX-5_at 3.510961919
AFFX-LysX-M_at 2.981852653
AFFX-LysX-3_at 3.350497247
AFFX-PheX-5_at 3.137503524
AFFX-PheX-M_at 0.925999419
AFFX-PheX-3_at 4.412781525
AFFX-ThrX-5_at 2.765534746
AFFX-ThrX-M_at 4.439623138

Total number of rows: 54675

Table truncated, full table size 1209 Kbytes.




Supplementary file Size Download File type/resource
GSM432992.cel.gz 5.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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