|
| Status |
Public on Sep 23, 2020 |
| Title |
PSECS_4A4 |
| Sample type |
SRA |
| |
|
| Source name |
Primary Mouse Epithelial Progenitor Cells
|
| Organism |
Mus musculus |
| Characteristics |
age: Adult (12wk)
tissue: Salivary Gland
antibodies: 4A4 mouse monoclonal anti-p63
genotype/variation: p63 WildType mouse
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
IP performed using the iDeal ChIP-Seq Kit on the Diagenode SX-G8 IP-Star Compact System.
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Description |
PSECS_4A4_vs_Input.bed.gz
|
| Data processing |
Reads were mapped to the Mus musculus genome (mm9 build) using Bowtie (v1.1.1).
macs2 (v2.1.0) was used to call peaks
Genome_build: mm9
Supplementary_files_format_and_content: macs2 peak-calling output
|
| |
|
| Submission date |
Feb 13, 2020 |
| Last update date |
Sep 23, 2020 |
| Contact name |
Jonathan E Bard |
| E-mail(s) |
jbard@buffalo.edu
|
| Organization name |
University at Buffalo
|
| Department |
Genomics and Bioinformatics Core
|
| Street address |
701 Ellicott Street
|
| City |
Buffalo |
| State/province |
New York |
| ZIP/Postal code |
14203 |
| Country |
USA |
| |
|
| Platform ID |
GPL17021 |
| Series (2) |
| GSE145264 |
p63 Maintains the Proliferative Potential of Salivary Gland Stem/Progenitor Cells by Regulating Follistatin, a Key Mediator of TGF-b/Activin Signaling [ChIP-seq] |
| GSE145268 |
p63 Maintains the Proliferative Potential of Salivary Gland Stem/Progenitor Cells by Regulating Follistatin, a Key Mediator of TGF-b/Activin Signaling |
|
| Relations |
| BioSample |
SAMN14096521 |
| SRA |
SRX7719464 |
