|
| Status |
Public on Feb 25, 2020 |
| Title |
23: Post-mortem dosolateral prefrontal cortex |
| Sample type |
SRA |
| |
|
| Source name |
Post-mortem dosolateral prefrontal cortex
|
| Organism |
Homo sapiens |
| Characteristics |
group: Major Depressive Disorder (MDD)
Sex: Male
ethnicity: Caucasian
tissue: Brain
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Chromium Single Cell 3’ Reagent Kits v2
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 4000 |
| |
|
| Description |
23_MPS12342909_H06_7650_S1_L002
|
| Data processing |
10X Genomics Cellranger v2.1.0 mkfastq
10X Genomics Cellranger v2.1.0 count
Genome_build: Custom pre-mRNA reference produced with 10X Genomics Cellranger v2.0.0 mkref (provided, see GRCh38-1.2.0_premrna.tar.gz)
|
| |
|
| Submission date |
Jan 23, 2020 |
| Last update date |
Aug 04, 2020 |
| Contact name |
Gustavo Turecki |
| E-mail(s) |
gustavo.turecki@mcgill.ca
|
| Organization name |
McGill University
|
| Department |
Psychiatry
|
| Lab |
McGill Group for Suicide Studies
|
| Street address |
6875 Boulevard LaSalle
|
| City |
Montreal |
| State/province |
Quebec |
| ZIP/Postal code |
H4H 1R3 |
| Country |
Canada |
| |
|
| Platform ID |
GPL20301 |
| Series (1) |
| GSE144136 |
Single-nucleus RNA-seq in the post-mortem brain in major depressive disorder |
|
| Relations |
| BioSample |
SAMN13909678 |
| SRA |
SRX7623282 |
