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Sample GSM418620 Query DataSets for GSM418620
Status Public on Oct 01, 2009
Title anti-PECAM beads purified P16 Fz4-/- cerebellar endothelial cells replicate 3
Sample type RNA
 
Source name anti-PECAM beads purified P16 Fz4-/- cerebellar endothelial cells
Organism Mus musculus
Characteristics cell type: purified cerebellar endothelial cells
genetic modification: P16 Fz4-/-
gender: mixed gender
strain: C57Bl6/129 mixed background
Extracted molecule total RNA
Extraction protocol Trizol and RNeasy according to manufacturer's instructions.
Label Biotin
Label protocol Johns Hopkins Microarray Core Facility
http://www.microarray.jhmi.edu/
 
Hybridization protocol Johns Hopkins Microarray Core Facility
http://www.microarray.jhmi.edu/
Scan protocol Johns Hopkins Microarray Core Facility
http://www.microarray.jhmi.edu/
Description contact Yanshu Wang (ywang@jhmi.edu) for details
Data processing Raw data was processed in R2.4.1 using the affy and rma packages from the Bioconductor Project (www.bioconductor.org).
 
Submission date Jun 18, 2009
Last update date Aug 28, 2018
Contact name Xin Ye
Organization name Johns Hopkins School of Medicine
Street address 725 N Wolfe Street, PCTB 805
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL1261
Series (2)
GSE16707 Long-term effect on the transcriptome of loss of Frizzled4 signaling in cerebellar endothelial cells
GSE16841 Transcriptional regulation by Norrin-Frizzled4 signaling
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE RMA signal intensity

Data table
ID_REF VALUE
1415670_at 9.570939054
1415671_at 10.58439739
1415672_at 9.992088714
1415673_at 7.094018382
1415674_a_at 9.008270396
1415675_at 9.283048104
1415676_a_at 10.04060947
1415677_at 9.100185349
1415678_at 12.26315091
1415679_at 10.6235539
1415680_at 9.638364606
1415681_at 9.115052764
1415682_at 7.968239256
1415683_at 10.03813471
1415684_at 8.132242121
1415685_at 8.582513895
1415686_at 10.44128429
1415687_a_at 12.17572629
1415688_at 11.11656226
1415689_s_at 7.513377874

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM418620.CEL.gz 3.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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