|
| Status |
Public on Mar 01, 2020 |
| Title |
sarcoma classifier reference case 349 |
| Sample type |
genomic |
| |
|
| Source name |
sarcoma sample
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: sarcoma
material preparation: FFPE
|
| Treatment protocol |
An automated extraction was done with a Maxwell system (Promega, Fitchburg, WI, USA) and the Maxwell 16 FFPE Plus LEV DNA Purification Kit according to the manufacturer’s instructions.
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Illumina protocol
|
| Label |
Cy3,Cy5
|
| Label protocol |
Illumina protocol
|
| |
|
| Hybridization protocol |
Illumina protocol
|
| Scan protocol |
Illumina iScan System according to the manufacturer's protocol
|
| Description |
Methylation data from sarcoma sample
REFERENCE_SAMPLE 349
|
| Data processing |
Bioconductor (Version 3.3) package minifi (Version 1.18) using function 'preprocessIllumina' Average beta
Average Beta
|
| |
|
| Submission date |
Nov 19, 2019 |
| Last update date |
Mar 02, 2020 |
| Contact name |
Daniel Schrimpf |
| E-mail(s) |
daniel.schrimpf@med.uni-heidelberg.de
|
| Organization name |
University Hospital Heidelberg, Intitute of Pathology
|
| Department |
Neuropathology
|
| Street address |
Im Neuenheimer Feld 224
|
| City |
Heidelberg |
| ZIP/Postal code |
69120 |
| Country |
Germany |
| |
|
| Platform ID |
GPL21145 |
| Series (1) |
| GSE140686 |
Sarcoma Classification by DNA-methylation profiling |
|
