GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM410825

Query DataSets for GSM410825

Status

Public on Jul 29, 2009

Title

synthetic_miRNAs_SREK_amplified_rep3

Sample type

SRA

Source name

synthetic miRNA

Organism

Homo sapiens

Characteristics

source: synthetic miRNA

Extracted molecule

total RNA

Extraction protocol

SREK: SREK was performed according to the manufacturer’s protocol (Ambion, Inc, Austin, TX).

Library strategy

RNA-Seq

Library source

transcriptomic

Library selection

size fractionation

Instrument model

AB SOLiD System 2.0

Description

none

Data processing

Sequencing reads were mapped to the reference set of miRNAs using SHRiMP. Reads with 3 or less colorspace errors were included in the further analysis.

Submission date

Jun 01, 2009

Last update date

Jun 11, 2013

Contact name

Elzo de Wit

Phone

+31 30 2121 800

Organization name

Hubrecht Institute

Street address

Uppsalalaan 8

City

Utrecht

ZIP/Postal code

3584 CT

Country

Netherlands

Platform ID

GPL9138

Series (2)

GSE16372	Limitations and possibilities of small RNA digital gene expression profiling: synthetic miRNAs replicates (SOLiD)
GSE16374	Limitations and possibilities of small RNA digital gene expression profiling

Relations

BioSample

SAMN02198698

Data table header descriptions
SEQUENCE
COUNT	count

Data table
SEQUENCE	COUNT
hsa-miR-340	934970
hsa-miR-571	276673
hsa-miR-99a	259618.5
hsa-miR-19b	231720
hsa-miR-325	220002
hsa-miR-621	172338
hsa-miR-551a	163261
hsa-miR-19a	144989
hsa-miR-324-5p	130865
hsa-miR-192	127171
hsa-miR-409-3p	120495
hsa-miR-150	117583
hsa-miR-497	108682
hsa-miR-501	107878
hsa-miR-204	105555
hsa-miR-301	103923
hsa-miR-145	103604
hsa-miR-532	100562
hsa-miR-339	98191
hsa-miR-642	95705

Total number of rows: 473

Table truncated, full table size 8 Kbytes.

Supplementary data files not provided

Processed data included within Sample table