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Sample GSM410824

Query DataSets for GSM410824

Status

Public on Jul 29, 2009

Title

synthetic_miRNAs_SREK_amplified_rep2

Sample type

SRA

Source name

synthetic miRNA

Organism

Homo sapiens

Characteristics

source: synthetic miRNA

Extracted molecule

total RNA

Extraction protocol

SREK: SREK was performed according to the manufacturer’s protocol (Ambion, Inc, Austin, TX).

Library strategy

RNA-Seq

Library source

transcriptomic

Library selection

size fractionation

Instrument model

AB SOLiD System 2.0

Description

none

Data processing

Sequencing reads were mapped to the reference set of miRNAs using SHRiMP. Reads with 3 or less colorspace errors were included in the further analysis.

Submission date

Jun 01, 2009

Last update date

Jun 11, 2013

Contact name

Elzo de Wit

Phone

+31 30 2121 800

Organization name

Hubrecht Institute

Street address

Uppsalalaan 8

City

Utrecht

ZIP/Postal code

3584 CT

Country

Netherlands

Platform ID

GPL9138

Series (2)

GSE16372	Limitations and possibilities of small RNA digital gene expression profiling: synthetic miRNAs replicates (SOLiD)
GSE16374	Limitations and possibilities of small RNA digital gene expression profiling

Relations

BioSample

SAMN02197745

Data table header descriptions
SEQUENCE
COUNT	count

Data table
SEQUENCE	COUNT
hsa-miR-340	726956
hsa-miR-571	208420
hsa-miR-99a	186638
hsa-miR-325	150144
hsa-miR-19b	148393.5
hsa-miR-642	107645
hsa-miR-621	107623
hsa-miR-551a	104035
hsa-miR-501	95875
hsa-miR-10a	95784.5
hsa-miR-19a	90318.5
hsa-miR-532	89209
hsa-miR-324-5p	88384
hsa-miR-192	85790.5
hsa-miR-125b	83150.5
hsa-miR-145	83091
hsa-miR-125a	81796.5
hsa-miR-301	81166
hsa-miR-339	80837
hsa-miR-631	79833

Total number of rows: 473

Table truncated, full table size 8 Kbytes.

Supplementary data files not provided

Processed data included within Sample table