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| Status |
Public on Mar 28, 2021 |
| Title |
H1_0154 |
| Sample type |
SRA |
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| Source name |
Human skin
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| Organism |
Homo sapiens |
| Characteristics |
gender: Male
age: 45
wound type: Acute wound
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| Extracted molecule |
total RNA |
| Extraction protocol |
Libraries generated for sequencing was carried out on Illumina sequencer based on Smart-seq2 protocol.
RNA libraries were prepared for sequencing using standard Illumina protocols
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
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| Description |
Human skin cell
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| Data processing |
The sequencing fregments were aligned to the GRCh38 genome assembly using STAR.
Genome_build: GRCh38
Supplementary_files_format_and_content: tab-delimited text files include "Read counts" and RPKM values for each Sample
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| Submission date |
Sep 23, 2019 |
| Last update date |
Mar 28, 2021 |
| Contact name |
Ning Xu |
| Organization name |
Karolinska Institutet
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| Street address |
CMM L8:02
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| City |
Stockholm |
| ZIP/Postal code |
17176 |
| Country |
Sweden |
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| Platform ID |
GPL11154 |
| Series (1) |
| GSE137897 |
Transcriptional programming of human epidermis during wound repair and in pressure ulcer at single-cell resolution |
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| Relations |
| BioSample |
SAMN12823408 |
| SRA |
SRX6891780 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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