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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 02, 2021 |
| Title |
Plasmid_rep1_CRISPR_RBP |
| Sample type |
SRA |
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| Source name |
plasmid
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| Organism |
synthetic construct |
| Characteristics |
cell line: plasmid
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| Growth protocol |
Standard
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
Plasmid was PCRed first with primers flanking the sgRNA and second with Illumina sequencing adapters.
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| Library strategy |
OTHER |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina HiSeq 4000 |
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| Description |
all.countsummary.txt
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| Data processing |
Library strategy: DNA-seq
CRISPR screening data was aligned and processed using MaGeCK.
Genome_build: hg19
Supplementary_files_format_and_content: MaGeCK processed gene summary
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| Submission date |
Sep 11, 2019 |
| Last update date |
Jul 02, 2021 |
| Contact name |
Gene Yeo |
| E-mail(s) |
geneyeo@ucsd.edu
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| Organization name |
UCSD
|
| Street address |
2880 Torrey Pines Scenic Dr. Room 3805/Yeo Lab
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| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92037 |
| Country |
USA |
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| Platform ID |
GPL21616 |
| Series (1) |
| GSE137258 |
Inhibition of YTHDF2 triggers proteotoxic cell death in MYC-driven breast cancer |
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| Relations |
| BioSample |
SAMN12727109 |
| SRA |
SRX6830187 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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