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Sample GSM406194 Query DataSets for GSM406194
Status Public on May 21, 2009
Title Estrogen and Progesterone LC-EP2
Sample type RNA
 
Source name Laser captured serotonin neurons
Organism Macaca mulatta
Characteristics gender: Female
cell type: serotonin neuron
Treatment protocol Silastic capsules containing crystalline steroids were implanted subcutaneously in the periscapular area for one month prior to euthanasia. Serotonin neurons were laser captured from sections of the dorsal raphe nucleus.
Extracted molecule total RNA
Extraction protocol RNA extraction with Qiagen RNAeasy microkit
Label Biotin
Label protocol Biotinylated Enzo kit
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Description n/a
Data processing GCOS1.0 software
 
Submission date May 20, 2009
Last update date May 20, 2009
Contact name Arubala P. Reddy
E-mail(s) reddya@ohsu.edu
Phone 503 690 5330
Fax 504 690 5384
Organization name Oregon Health and Sciences University
Department Oregon National Primate Research Center
Lab Reproductive sciences
Street address 505 NW 185th Ave
City Beaverton
State/province OR
ZIP/Postal code 97006
Country USA
 
Platform ID GPL3535
Series (1)
GSE16169 Effect of Ovarian Hormone on Gene Expression in Laser Captured Serotonin Neurons from Monkeys

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 5607.33 P 0.000126798
AFFX-BioB-M_at 10917.2 P 5.16732e-05
AFFX-BioB-3_at 6028.5 P 4.42873e-05
AFFX-BioC-5_at 7515 P 5.16732e-05
AFFX-BioC-3_at 6723.16 P 5.16732e-05
AFFX-BioDn-5_at 55990.5 P 4.42873e-05
AFFX-BioDn-3_at 86718.4 P 4.42873e-05
AFFX-CreX-5_at 204386 P 5.16732e-05
AFFX-CreX-3_at 243911 P 4.42873e-05
AFFX-DapX-5_at 177.913 A 0.262827
AFFX-DapX-M_at 51.0649 A 0.440646
AFFX-DapX-3_at 36.0235 A 0.916426
AFFX-LysX-5_at 82.668 A 0.724854
AFFX-LysX-M_at 107.881 A 0.51489
AFFX-LysX-3_at 169.313 A 0.275146
AFFX-PheX-5_at 80.1874 A 0.712257
AFFX-PheX-M_at 17.2761 A 0.978098
AFFX-PheX-3_at 30.3423 A 0.910541
AFFX-ThrX-5_at 42.1326 A 0.843268
AFFX-ThrX-M_at 176.636 A 0.227636

Total number of rows: 52865

Table truncated, full table size 2085 Kbytes.




Supplementary file Size Download File type/resource
GSM406194.CEL.gz 3.8 Mb (ftp)(http) CEL
GSM406194.CHP.gz 297.4 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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