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Sample GSM4030126 Query DataSets for GSM4030126
Status Public on Aug 14, 2019
Title Monocytes 1 day after Kupffer cell depletion mono_D1_3
Sample type RNA
 
Source name Liver
Organism Mus musculus
Characteristics strain: C57BL/6
Treatment protocol All Methods listed in Bonnardel et al. Stellate cells, hepatocytes and endothelial cells imprint the Kupffer cell identity on monocytes colonizing the liver macrophage niche . Immunity. 2019.
Growth protocol All Methods listed in Bonnardel et al. Stellate cells, hepatocytes and endothelial cells imprint the Kupffer cell identity on monocytes colonizing the liver macrophage niche . Immunity. 2019.
Extracted molecule total RNA
Extraction protocol All Methods listed in Bonnardel et al. Stellate cells, hepatocytes and endothelial cells imprint the Kupffer cell identity on monocytes colonizing the liver macrophage niche . Immunity. 2019.
Label Biotin
Label protocol All Methods listed in Bonnardel et al. Stellate cells, hepatocytes and endothelial cells imprint the Kupffer cell identity on monocytes colonizing the liver macrophage niche . Immunity. 2019.
 
Hybridization protocol All Methods listed in Bonnardel et al. Stellate cells, hepatocytes and endothelial cells imprint the Kupffer cell identity on monocytes colonizing the liver macrophage niche . Immunity. 2019.
Scan protocol Affymetrix Gene ChIP Scanner 3000 7G
Description Monocytes 1 day after Kupffer cell depletion
Monocytes 1 day after Kupffer cell depletion
Data processing Data were processed using Bioconductor. Normalisation was done by RMA.
All samples passed quality control, and the Robust Multi-array Average (RMA) procedure was used to normalize data within arrays (probeset summarization, background correction and log2-transformation) and between arrays (quantile normalization).
 
Submission date Aug 13, 2019
Last update date Aug 14, 2019
Contact name Liesbet Martens
E-mail(s) liesbet.martens@irc.vib-ugent.be
Organization name VIB-University of Ghent
Department VIB Inflammation Research Center
Street address Technologiepark 927
City Zwijnaarde
ZIP/Postal code 9052
Country Belgium
 
Platform ID GPL6246
Series (2)
GSE135788 Stellate cells, hepatocytes and endothelial cells imprint the Kupffer cell identity on monocytes colonizing the liver macrophage niche (microarray)
GSE135790 Stellate cells, hepatocytes and endothelial cells imprint the Kupffer cell identity on monocytes colonizing the liver macrophage niche

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
10338001 12.70160062
10338002 5.886941196
10338003 10.96617206
10338004 10.27225615
10338005 2.623997406
10338006 2.885497029
10338007 3.200823639
10338008 3.877468988
10338009 7.440253228
10338010 2.677611398
10338011 5.476005065
10338012 2.791088263
10338013 2.497415936
10338014 2.572815563
10338015 2.477966343
10338016 6.85365093
10338017 13.43461044
10338018 6.211742575
10338019 4.920292722
10338020 7.610306799

Total number of rows: 35556

Table truncated, full table size 725 Kbytes.




Supplementary file Size Download File type/resource
GSM4030126_mono_D1_3.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table
Processed data are available on Series record

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