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Sample GSM3967218 Query DataSets for GSM3967218
Status Public on Aug 14, 2019
Title genomic DNA from cervical scrapes 10 [Sample7_x311]
Sample type genomic
Source name cervical intraepithelial neoplasia grade 1 sample
Organism Homo sapiens
Characteristics gender: Female
tissue: cervical intraepithelial neoplasia grade 1 sample
sample id: cervical scrapes 10
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from LBC samples using Qiagen DNeasy Kit according to standard instructions
Label biotin
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation850 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description cervical intraepithelial neoplasia grade 1 sample
Data processing ChAMP package v2.9.9; the non_normalized.txt contains unmethylated and methylated signal intensities
Submission date Jul 24, 2019
Last update date Aug 14, 2019
Contact name wang rui jie
Phone 15936296950
Organization name The Third Affiliated Hospital of Zhengzhou University, Zhengzhou University
Street address No. 7 Front Kangfu Street, Er'qi District, Zhengzhou, Henan, China
City Henan
State/province zhengzhou
ZIP/Postal code 450000
Country China
Platform ID GPL23976
Series (1)
GSE134772 Genome-wide DNA methylation analysis of cervical scrapes samples

Data table header descriptions
VALUE Normalized Average Beta (The normalization method:Peak Based Correction)

Data table
ID_REF VALUE Detection_Pval
cg07881041 0.965665763 0
cg03513874 0.970465778 0
cg05451842 0.004337854 0
cg14797042 0.932425778 0
cg09838562 0.009746185 0
cg09261072 0.522180523 0
cg04118974 0.571780317 0
cg01236347 0.252165597 0
cg22585117 0.957755278 0
cg25552317 0.985005894 0
cg23875663 0.759366332 0
cg07659892 0.003628716 0
cg15995909 0.984634899 0
cg23728960 0.264303198 0
cg11993619 0.520402172 0
cg01925883 0.826219718 0
cg03452160 0.702888252 0
cg09430819 0.886621506 0
cg21784030 0.667739709 0
cg13871826 0.739450392 0

Total number of rows: 729211

Table truncated, full table size 17724 Kbytes.

Supplementary file Size Download File type/resource
GSM3967218_202298850246_R04C01_Grn.idat.gz 7.1 Mb (ftp)(http) IDAT
GSM3967218_202298850246_R04C01_Red.idat.gz 7.1 Mb (ftp)(http) IDAT
Raw data provided as supplementary file
Processed data included within Sample table
Raw data are available on Series record

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