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Sample GSM396140 Query DataSets for GSM396140
Status Public on Apr 14, 2010
Title .SAL_I_3
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics timepoint: 1h
drug: Saline
group no.: 15
large batch: X
plate: 1953348007
hybridization batch: III
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Replicate 3
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Apr 22, 2009
Last update date May 02, 2009
Contact name Marcin Piechota
E-mail(s) marpiech@if-pan.krakow.pl
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6105
Series (1)
GSE15774 Transcriptional networks regulated by drugs of abuse in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_2431248 7.48223543
ILMN_3160339 7.102971901
ILMN_3161159 7.671364729
ILMN_2758597 7.056246929
ILMN_2644469 12.85225994
ILMN_2656393 7.95102958
ILMN_3160634 7.593635247
ILMN_3161394 11.07360443
ILMN_2610322 6.615811173
ILMN_2741606 7.392260279
ILMN_1247267 10.08982419
ILMN_2594811 7.222515403
ILMN_2689425 6.431330421
ILMN_2745565 6.719638712
ILMN_1212992 6.258498439
ILMN_2629183 6.586194871
ILMN_1251092 9.282598346
ILMN_2715803 9.974599452
ILMN_2762509 12.10844729
ILMN_2496817 10.39531791

Total number of rows: 46632

Table truncated, full table size 1133 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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