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GEO accession:
Sample GSM393021
Query DataSets for GSM393021
Status
Public on Apr 01, 2010
Title
case 28
Sample type
genomic
Source name
Ewing Sarcoma primary sample, case 28
Organism
Homo sapiens
Characteristics
sample id: case 28
Extracted molecule
genomic DNA
Extraction protocol
As per PUREGENE DNA extracting kit
Label
biotin
Label protocol
Affymetrix standard protocol
Hybridization protocol
Affymetrix standard protocol
Scan protocol
Affymetrix standard protocol
Description
We have used anonymous normal references (own-lab-generated) for SNP array analysis.
case 28
Data processing
CNAG/AsCNAR 3.0
Submission date
Apr 16, 2009
Last update date
Sep 21, 2009
Contact name
Motohiro Kato
Organization name
University of Tokyo
Street address
7-3-1, Hongo, Bunkyo-ku
City
Tokyo
ZIP/Postal code
113-8655
Country
Japan
Platform ID
GPL3718
Series (1)
GSE15696
SNP chip data of EWS
Data table header descriptions
ID_REF
VALUE
log2ratio_AB
log2ratio_A
log2ratio_B
N_AB
N_A
N_B
Call_test
Data table
ID_REF
VALUE
log2ratio_A
log2ratio_B
N_AB
N_A
N_B
Call_test
SNP_A-1886933
0.317020
0.534338
0.061061
2
1
1
2
SNP_A-1902458
-0.019163
0.402931
-1.309857
2
0
0
1
SNP_A-2131660
-0.083612
0.613340
-0.666993
2
0
0
1
SNP_A-4221087
-0.034086
0.079815
-0.157756
2
1
1
2
SNP_A-1884606
0.073491
0.000000
0.000000
2
0
0
1
SNP_A-2235839
0.081418
0.513526
-1.329128
2
1
1
1
SNP_A-2218153
-0.482034
-0.101217
-1.000899
2
1
1
1
SNP_A-1919019
-0.003234
0.690480
-0.906273
2
0
0
3
SNP_A-1815933
0.116489
0.571043
-1.914444
2
1
1
3
SNP_A-2115098
-0.167255
0.512846
-0.648213
2
0
0
1
SNP_A-2264565
-0.072988
0.000000
0.000000
2
1
1
3
SNP_A-1788728
-0.146920
0.000000
0.000000
2
1
1
3
SNP_A-4218776
0.058514
0.000000
0.000000
2
0
0
1
SNP_A-2082194
0.096631
0.128310
0.064240
2
1
1
2
SNP_A-2135694
-0.140656
-0.131869
-0.149497
2
1
1
2
SNP_A-4220764
-0.137521
-0.085236
-0.191772
2
1
1
0
SNP_A-1796345
0.191810
0.000000
0.000000
2
0
0
3
SNP_A-1789472
-0.074285
0.000000
0.000000
2
0
0
3
SNP_A-1934233
-0.149627
0.765693
-0.833325
2
0
0
3
SNP_A-4207031
-0.241200
-0.234435
-0.247997
2
1
1
2
Total number of rows:
262264
Table truncated, full table size
12857 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM393021.CEL.gz
25.8 Mb
(ftp)
(http)
CEL
GSM393021.CHP.gz
549.9 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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