|
| Status |
Public on Jun 19, 2019 |
| Title |
Marginal Zone Lymphoma patient MZL_003 |
| Sample type |
RNA |
| |
|
| Source name |
biopsy
|
| Organism |
Homo sapiens |
| Characteristics |
diagnosis: Marginal Zone Lymphoma
tissue: tumor specimen
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol or Qiagen RNA extraction kit
|
| Label |
biotin
|
| Label protocol |
According to affymetrix protocol
|
| |
|
| Hybridization protocol |
According to affymetrix protocol
|
| Scan protocol |
According to affymetrix protocol
|
| Data processing |
Raw cel files were RMA normalized using the ExpressionFileCreator module of GenePattern31, and quality checked for batch effects by unsupervised clustering of the 3,000 most variably expressed genes across the dataset.
|
| |
|
| Submission date |
Jun 18, 2019 |
| Last update date |
Oct 26, 2021 |
| Contact name |
Michael R Green |
| E-mail(s) |
mgreen5@mdanderson.org
|
| Organization name |
MD Anderson Cancer Center
|
| Department |
Lymphoma/Myeloma
|
| Street address |
1515 Holcombe Blvd, Unit 903
|
| City |
Houston |
| State/province |
TX |
| ZIP/Postal code |
77030 |
| Country |
USA |
| |
|
| Platform ID |
GPL570 |
| Series (1) |
| GSE132929 |
Gene expression profiles with matched NGS in B-cell non-Hodgkin lymphoma |
|
