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Sample GSM37591 Query DataSets for GSM37591
Status Public on Dec 16, 2004
Title ENCODE: MeH3K4-IMR90 Rep2
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA using MeH3K4 antibody
Organism Homo sapiens
Extracted molecule genomic DNA
 
Channel 2
Source name input DNA
Organism Homo sapiens
Extracted molecule genomic DNA
 
 
Description Genome-wide location analysis of dimethylated K4 histone 3 binding at ENCODE regions in IMR90 cells. Replicate 2 of 3. Array ID in the lab is ENC250.
Keywords = ENCODE, ChIP-on-Chip, dimethylated K4 histone 3
 
Submission date Dec 14, 2004
Last update date May 27, 2005
Contact name Chunxu Qu
E-mail(s) qchunxu@ucsd.edu
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL1454
Series (1)
GSE2072 ENCODE: Histone H3 acetylation and K4 methylation in IMR90 cells

Data table header descriptions
ID_REF
VALUE log ratio (F635/F532)
STATISTICS statistics
P-VAL p-value calculated using single array error model
F635_INT F635 intensity with background intensity subtracted (normalized)
F532_INT F532 intensity with background intensity subtracted (normalized)
F635_MEDIAN F635 mdian intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532 standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation
FLAG flag from GenePro, 0 is useful

Data table
ID_REF VALUE STATISTICS P-VAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD FLAG
1 0.6125365 0.227739 1.005740e-01 478 312.63 583 560 212 104 119 104 530 514 112 173 185 162 0
2 0.3567185 0.130406 2.320956e-01 498 388.91 580 638 298 81 100 73 609 612 190 166 168 46 0
3 -0.0959329 -0.037442 5.832279e-01 734 784.47 825 802 267 90 110 76 1066 1008 289 177 186 100 0
4 0.1386834 0.053198 3.826240e-01 517 469.62 617 583 222 99 111 73 717 654 204 183 195 128 0
5 -0.2156702 -0.073607 6.602522e-01 354 411.08 443 516 219 88 101 67 645 706 360 177 178 54 0
6 0.4500166 0.168698 1.718473e-01 524 383.59 620 607 224 95 110 71 608 574 188 171 173 54 0
7 0.8394501 0.295840 4.840398e-02 415 231.93 508 499 207 92 106 70 426 428 121 160 168 63 0
8 -0.4269998 -0.165737 8.238847e-01 567 762.29 662 651 219 94 107 75 1030 997 202 166 169 47 0
9 -1.0348578 -0.341704 9.724422e-01 108 221.28 201 222 126 92 108 71 432 442 82 178 182 57 0
10 0.0812264 0.025165 4.438371e-01 114 107.76 208 230 143 93 108 74 296 274 75 170 173 48 0
11 -0.4979281 -0.181247 8.455014e-01 168 237.25 264 257 125 95 109 77 448 440 93 176 194 284 0
12 -0.5869822 -0.227135 8.988272e-01 661 992.89 772 800 197 110 125 84 1299 1285 218 175 205 342 0
13 -0.9636219 -0.350729 9.755017e-01 269 524.60 371 383 131 101 115 73 772 784 116 176 185 68 0
14 -0.0269604 -0.010131 5.226726e-01 494 503.32 586 588 242 91 108 68 749 676 267 177 175 43 0
15 0.2434022 0.087346 3.119720e-01 263 222.17 357 418 197 93 114 74 436 452 95 181 185 44 0
16 0.2106819 0.076840 3.331251e-01 331 286.03 418 429 208 86 109 77 511 520 154 184 192 80 0
17 -0.2491346 -0.096611 7.061833e-01 422 501.54 525 532 178 102 110 69 744 783 166 174 179 53 0
18 0.1241124 0.041492 4.079228e-01 188 172.50 282 323 175 93 115 86 367 345 123 168 174 62 0
19 0.2397756 0.093848 2.991788e-01 986 835.02 1095 1034 348 108 126 82 1124 1076 251 178 194 83 0
20 0.1717385 0.065788 3.559657e-01 511 453.65 605 631 218 93 107 71 699 642 200 183 194 110 0

Total number of rows: 25392

Table truncated, full table size 2430 Kbytes.




Supplementary file Size Download File type/resource
GSM37591_532.tif.gz 14.2 Mb (ftp)(http) TIFF
GSM37591_635.tif.gz 14.2 Mb (ftp)(http) TIFF

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