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GEO accession:
Sample GSM37591
Query DataSets for GSM37591
Status
Public on Dec 16, 2004
Title
ENCODE: MeH3K4-IMR90 Rep2
Sample type
genomic
Channel 1
Source name
Chromatin immunoprecipitated DNA using MeH3K4 antibody
Organism
Homo sapiens
Extracted molecule
genomic DNA
Channel 2
Source name
input DNA
Organism
Homo sapiens
Extracted molecule
genomic DNA
Description
Genome-wide location analysis of dimethylated K4 histone 3 binding at ENCODE regions in IMR90 cells. Replicate 2 of 3. Array ID in the lab is ENC250.
Keywords = ENCODE, ChIP-on-Chip, dimethylated K4 histone 3
Submission date
Dec 14, 2004
Last update date
May 27, 2005
Contact name
Chunxu Qu
E-mail(s)
qchunxu@ucsd.edu
Phone
(858)822-5767
Organization name
Ludwig Institute for Cancer Research
Department
Gene Regulation
Lab
RenLab
Street address
City
San Diego
State/province
CA
ZIP/Postal code
92093
Country
USA
Platform ID
GPL1454
Series (1)
GSE2072
ENCODE: Histone H3 acetylation and K4 methylation in IMR90 cells
Data table header descriptions
ID_REF
VALUE
log ratio (F635/F532)
STATISTICS
statistics
P-VAL
p-value calculated using single array error model
F635_INT
F635 intensity with background intensity subtracted (normalized)
F532_INT
F532 intensity with background intensity subtracted (normalized)
F635_MEDIAN
F635 mdian intensity
F635_MEAN
F635 mean intensity
F635_SD
F635 standard deviation
B635_MEDIAN
B635 median intensity
B635_MEAN
B635 mean intensity
B635_SD
B635 standard deviation
F532_MEDIAN
F532 median intensity
F532_MEAN
F532 mean intensity
F532_SD
F532 standard deviation
B532_MEDIAN
B532 median intensity
B532_MEAN
B532 mean intensity
B532_SD
B532 standard deviation
FLAG
flag from GenePro, 0 is useful
Data table
ID_REF
VALUE
STATISTICS
P-VAL
F635_INT
F532_INT
F635_MEDIAN
F635_MEAN
F635_SD
B635_MEDIAN
B635_MEAN
B635_SD
F532_MEDIAN
F532_MEAN
F532_SD
B532_MEDIAN
B532_MEAN
B532_SD
FLAG
1
0.6125365
0.227739
1.005740e-01
478
312.63
583
560
212
104
119
104
530
514
112
173
185
162
0
2
0.3567185
0.130406
2.320956e-01
498
388.91
580
638
298
81
100
73
609
612
190
166
168
46
0
3
-0.0959329
-0.037442
5.832279e-01
734
784.47
825
802
267
90
110
76
1066
1008
289
177
186
100
0
4
0.1386834
0.053198
3.826240e-01
517
469.62
617
583
222
99
111
73
717
654
204
183
195
128
0
5
-0.2156702
-0.073607
6.602522e-01
354
411.08
443
516
219
88
101
67
645
706
360
177
178
54
0
6
0.4500166
0.168698
1.718473e-01
524
383.59
620
607
224
95
110
71
608
574
188
171
173
54
0
7
0.8394501
0.295840
4.840398e-02
415
231.93
508
499
207
92
106
70
426
428
121
160
168
63
0
8
-0.4269998
-0.165737
8.238847e-01
567
762.29
662
651
219
94
107
75
1030
997
202
166
169
47
0
9
-1.0348578
-0.341704
9.724422e-01
108
221.28
201
222
126
92
108
71
432
442
82
178
182
57
0
10
0.0812264
0.025165
4.438371e-01
114
107.76
208
230
143
93
108
74
296
274
75
170
173
48
0
11
-0.4979281
-0.181247
8.455014e-01
168
237.25
264
257
125
95
109
77
448
440
93
176
194
284
0
12
-0.5869822
-0.227135
8.988272e-01
661
992.89
772
800
197
110
125
84
1299
1285
218
175
205
342
0
13
-0.9636219
-0.350729
9.755017e-01
269
524.60
371
383
131
101
115
73
772
784
116
176
185
68
0
14
-0.0269604
-0.010131
5.226726e-01
494
503.32
586
588
242
91
108
68
749
676
267
177
175
43
0
15
0.2434022
0.087346
3.119720e-01
263
222.17
357
418
197
93
114
74
436
452
95
181
185
44
0
16
0.2106819
0.076840
3.331251e-01
331
286.03
418
429
208
86
109
77
511
520
154
184
192
80
0
17
-0.2491346
-0.096611
7.061833e-01
422
501.54
525
532
178
102
110
69
744
783
166
174
179
53
0
18
0.1241124
0.041492
4.079228e-01
188
172.50
282
323
175
93
115
86
367
345
123
168
174
62
0
19
0.2397756
0.093848
2.991788e-01
986
835.02
1095
1034
348
108
126
82
1124
1076
251
178
194
83
0
20
0.1717385
0.065788
3.559657e-01
511
453.65
605
631
218
93
107
71
699
642
200
183
194
110
0
Total number of rows:
25392
Table truncated, full table size
2430 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM37591_532.tif.gz
14.2 Mb
(ftp)
(http)
TIFF
GSM37591_635.tif.gz
14.2 Mb
(ftp)
(http)
TIFF
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