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Sample GSM37581 Query DataSets for GSM37581
Status Public on Dec 16, 2004
Title ENCODE: AcH3-IMR90 Rep1
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA using AcH3 antibody
Organism Homo sapiens
Extracted molecule genomic DNA
 
Channel 2
Source name input DNA
Organism Homo sapiens
Extracted molecule genomic DNA
 
 
Description Genome-wide location analysis of acetylated histone 3 binding at ENCODE regions in IMR90 cells. Replicate 1 of 3. Array ID in the lab is ENC049.
Keywords = ENCODE, ChIP-on-Chip, acetylayed histone 3
 
Submission date Dec 14, 2004
Last update date May 27, 2005
Contact name Chunxu Qu
E-mail(s) qchunxu@ucsd.edu
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL1454
Series (1)
GSE2072 ENCODE: Histone H3 acetylation and K4 methylation in IMR90 cells

Data table header descriptions
ID_REF
VALUE log ratio (F635/F532)
STATISTICS statistics
P-VAL p-value calculated using single array error model
F635_INT F635 intensity with background intensity subtracted (normalized)
F532_INT F532 intensity with background intensity subtracted (normalized)
F635_MEDIAN F635 mdian intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532 standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation
FLAG flag from GenePro, 0 is useful

Data table
ID_REF VALUE STATISTICS P-VAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD FLAG
1 0.4199595 0.151070 1.742779e-01 864.5 646.17 933 946 432 69 85 64 1240 1173 474 128 134 57 0
2 0.6227701 0.212585 9.356805e-02 1086.5 705.60 1156 1131 551 70 87 68 1344 1323 700 130 135 54 0
3 0.4581037 0.167675 1.490696e-01 1345.5 979.45 1416 1377 571 71 91 113 1815 1663 672 131 154 369 0
4 0.4876448 0.176400 1.368528e-01 1323.5 943.90 1395 1319 563 72 96 121 1753 1598 713 130 154 374 0
5 0.4912210 0.177715 1.350727e-01 1133.5 806.40 1204 1209 502 71 91 80 1515 1384 591 128 136 68 0
6 0.6688934 0.057455 3.607283e-01 1037.5 652.58 1113 2162 3139 76 107 217 1258 3311 5733 135 155 163 0
7 0.6592295 0.228457 7.815610e-02 593.5 375.81 668 701 333 75 96 114 780 774 294 132 146 128 0
8 -0.2510597 -0.092586 7.171846e-01 917.5 1091.90 994 951 433 77 100 110 2006 1790 657 129 150 158 0
9 -0.1860928 -0.066022 6.589757e-01 379.5 431.75 450 455 225 71 98 113 873 848 316 129 148 150 0
10 0.7004894 0.210623 9.561902e-02 240.5 147.99 310 361 217 70 90 78 387 410 176 130 137 68 0
11 -0.0190856 -0.006969 5.172453e-01 494.5 501.09 568 553 269 74 90 71 993 922 327 130 138 85 0
12 -0.1175150 -0.044340 6.083932e-01 1209.5 1312.14 1285 1229 490 76 95 78 2385 2155 730 130 140 97 0
13 -0.1621827 -0.060524 6.463770e-01 842.5 942.74 918 953 378 76 102 104 1749 1650 546 128 152 171 0
14 0.4582108 0.152636 1.717910e-01 840.5 611.79 914 975 553 74 96 98 1180 1197 619 127 146 154 0
15 0.6764850 0.232695 7.438621e-02 751.5 470.20 824 846 434 73 92 77 939 907 376 129 133 53 0
16 0.4455434 0.162716 1.563283e-01 839.5 616.45 916 929 389 77 92 73 1189 1134 407 128 135 52 0
17 0.0361587 0.013530 4.665460e-01 818.5 798.24 893 901 374 75 96 94 1500 1365 469 127 138 102 0
18 0.7467642 0.254130 5.741025e-02 504.5 300.65 577 594 285 73 91 75 646 646 256 127 134 86 0
19 0.5123078 0.184326 1.263627e-01 1158.5 812.22 1231 1217 525 73 96 93 1524 1419 609 127 138 95 0
20 0.3540425 0.127232 2.149162e-01 1127.5 882.14 1203 1154 561 76 97 93 1645 1470 673 128 139 93 0

Total number of rows: 25392

Table truncated, full table size 2473 Kbytes.




Supplementary file Size Download File type/resource
GSM37581_532.tif.gz 54.7 Mb (ftp)(http) TIFF
GSM37581_635.tif.gz 56.3 Mb (ftp)(http) TIFF

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