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Sample GSM3747 Query DataSets for GSM3747
Status Public on Jan 29, 2003
Title RH_Th5_25A
Sample type RNA
 
Source name Thymic T cell precursors
Organism Mus musculus
Extracted molecule total RNA
 
Description Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25+CD4-CD8-
Replicate number: 5 (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 1373.86, Stdev: 57.48, Max: 1507.8, Min: 1286.1
Corner+ Avg:1397, Count:32
Corner- Avg:44773, Count:32
BF= SDT=157.8(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=39.45 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=157.8 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000
 
Submission date Jan 28, 2003
Last update date May 27, 2005
Contact name Reinhard Hoffmann
E-mail(s) reinhard.hoffmann@lrz.tum.de
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL75
Series (1)
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_In_Ave Trimmed probe pair set
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_In_Ave Pos_Fraction Log_Avg Pos/Neg VALUE ABS_CALL
IL2_at 4 2 19 19 18 0.21 0.89 2.0 -5.8 A
IL10_at 5 5 20 20 18 0.25 0.55 1.0 131.2 A
GMCSF_at 4 6 20 20 18 0.20 -0.03 0.7 1.3 A
TNFRII_at 4 3 20 20 18 0.20 -0.14 1.3 25.9 A
MIP1-B_at 6 3 20 20 18 0.30 1.02 2.0 793.1 A
IL4_at 5 3 20 20 18 0.25 0.26 1.7 32.0 A
IL12_P40_at 3 8 20 20 18 0.15 -0.46 0.4 -271.8 A
TNFa_at 4 5 20 20 19 0.20 -0.79 0.8 -30.2 A
TCRa_at 2 8 20 20 19 0.10 -1.22 0.3 -418.9 A
AFFX-BioB-5_at 5 5 20 20 19 0.25 0.56 1.0 113.4 A
AFFX-BioB-M_at 3 2 20 20 18 0.15 0.15 1.5 -7.5 A
AFFX-BioB-3_at 9 5 20 20 20 0.45 0.74 1.8 268.8 A
AFFX-BioC-5_at 15 0 20 20 19 0.75 3.17 Undef 1011.3 P
AFFX-BioC-3_at 12 1 20 20 20 0.60 2.43 12.0 944.0 P
AFFX-BioDn-5_at 16 1 20 20 20 0.80 3.77 16.0 1619.9 P
AFFX-BioDn-3_at 16 0 20 20 18 0.80 4.65 Undef 8020.3 P
AFFX-CreX-5_at 20 0 20 20 20 1.00 7.48 Undef 14489.0 P
AFFX-CreX-3_at 19 0 20 20 20 0.95 7.01 Undef 18659.7 P
AFFX-BioB-5_st 9 3 20 20 18 0.45 1.10 3.0 361.5 M
AFFX-BioB-M_st 4 3 20 20 18 0.20 0.19 1.3 -139.3 A

Total number of rows: 6584

Table truncated, full table size 318 Kbytes.




Supplementary data files not provided

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