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Sample GSM3744299 Query DataSets for GSM3744299
Status Public on May 02, 2019
Title Subject 104004 at Week 0,non-lesional
Sample type RNA
 
Source name homo sapiens skin biopsy, Week 0, non-lesional
Organism Homo sapiens
Characteristics Sex: F
time: Week0
tissue: NL
treatment: Placebo
subject id: 104004
race: BLACK OR AFRICAN AMERICAN
ethnicity: NOT HISPANIC OR LATINO
easi: 38.5
scorad: 57.8
Treatment protocol Atopic dermatitis patients randomized 1:1 to dupilumab 200mg or placebo weekly for 16 weeks, with lesional and non-lesional biopsies taken at baseline, week 4 (only lesional) and week 16 both lesional and non lesional
Growth protocol n/a
Extracted molecule total RNA
Extraction protocol RNA was extracted according to manufacturer's instructions.
Label biotin
Label protocol n/a
 
Hybridization protocol RNA was hybridized to Affymetrix Human U133Plus 2.0 gene arrays
Scan protocol n/a
Description gene expression data from lesional and non-lesional skin phenotypes of patients with moderate-to-severe atopic dermatitis
Data processing Expression measures were obtained by using the GC Robust Multi-array Average algorithm.
 
Submission date May 01, 2019
Last update date Oct 01, 2019
Contact name Mayte Suarez-Farinas
E-mail(s) mayte.suarezfarinas@mssm.edu
Organization name Mount SinaiSchool of Medicine
Street address 1425 Madison Ave, L2-70C, Box 1077,
City New York
State/province NY
ZIP/Postal code 10075
Country USA
 
Platform ID GPL570
Series (1)
GSE130588 Dupilumab progressively improves systemic and cutaneous abnormalities in patients with atopic dermatitis

Data table header descriptions
ID_REF
VALUE log2 normalized expression

Data table
ID_REF VALUE
1007_s_at 11.53709618
1053_at 9.239150503
117_at 7.593441228
121_at 5.454976472
1255_g_at 2.092268341
1294_at 7.934887484
1316_at 7.989069854
1320_at 5.916315348
1405_i_at 3.676436808
1431_at 5.865749449
1438_at 3.922135542
1487_at 9.681855117
1494_f_at 2.092268341
1552256_a_at 7.769954411
1552257_a_at 10.80870336
1552258_at 3.872171897
1552261_at 2.388293109
1552263_at 7.470775138
1552264_a_at 8.070404309
1552266_at 2.092268341

Total number of rows: 54675

Table truncated, full table size 1213 Kbytes.




Supplementary file Size Download File type/resource
GSM3744299_167_HGU133_plus_2.0_Hui_11132014_HG-U133_Plus_2_.CEL.gz 5.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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