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Sample GSM3677 Query DataSets for GSM3677
Status Public on Jun 14, 2003
Title Th1 clone R2.2
Sample type SAGE
Anchor NlaIII
Tag Count 10135
Tag Length 10
 
Source name CD4+ Th1 clone H-Y specific (resting)
Organism Mus musculus
Extracted molecule total RNA
 
Description A CD4+ Th1 clone (R2.2) from a primed A1xRAG-1-/- TCR transgenic mouse specific for H-Y + H2Ek. mRNA was derived from resting T cells 7 days from last stimulation. cDNA was preamplified (SMART) before SAGE analysis.
Keywords = T cell, clone, Th1, CD4, graft rejection, SMART
 
Submission date Jan 15, 2003
Last update date Nov 19, 2008
Contact name Steve Cobbold
E-mail(s) stephen.cobbold@path.ox.ac.uk
Phone +44-(0)1865-275504
Fax +44-(0)1865-275501
URL http://www.molbiol.ox.ac.uk/pathology/tig/welcome.html
Organization name University of Oxford
Department Sir William Dunn School of Pathology
Lab Therapeutic Immunology Group
Street address South Parks Road
City Oxford
State/province Oxfordshire
ZIP/Postal code OX1 3RE
Country United Kingdom
 
Platform ID GPL11
Series (2)
GSE205 Mouse T helper cell clones
GSE1316 IL-10-conditioned dendritic cells elicit innate inflammatory gene products in response to danger signals

Data table header descriptions
TAG 10 base pair SAGE Tag
COUNT Absolute count of each Tag in library
TPM tags per million

Data table
TAG COUNT TPM
GTGGCTCACA 240 23680.32
TTTTCAAAAA 149 14701.53
AGTTGGAAAC 100 9866.80
AAGGCTTATT 94 9274.79
GTCCTTCTCT 64 6314.75
GCTGCCCTCC 61 6018.75
TTGGTGAAGG 61 6018.75
AAGGTGGAAG 57 5624.07
CCTTTAATCC 52 5130.74
CTAGTCTTTG 43 4242.72
AGGCAGACAG 41 4045.39
ATGACTGATA 41 4045.39
GATTCCGTGA 40 3946.72
AAAACAGTGG 36 3552.05
CACAAACGGT 35 3453.38
ACCGATGGCT 33 3256.04
AGAGCGAAGT 33 3256.04
TGGTTGCTGG 32 3157.38
GCGGCGGATG 31 3058.71
AAGATCTCTG 30 2960.04

Total number of rows: 6041

Table truncated, full table size 113 Kbytes.




Supplementary data files not provided
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