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Sample GSM362883 Query DataSets for GSM362883
Status Public on Jan 04, 2010
Title Clone1979_LPI2_N+_4w_rep1
Sample type RNA
 
Source name LPI2, normal nitrogen, 4-week
Organism Populus fremontii x Populus angustifolia
Characteristics clone: 1979
Treatment protocol Plants of ~1 m height were distributed into two large ebb and flow hydroponic tubs, one receiving 5 mM nitrogen (N+) and the other with 0.125 mM nitrogen (N-). Plants were maintained as described in Growth Protocol for 4 weeks prior to sampling
Growth protocol Rooted cuttings, 10-15 cm in height, were transferred into aerated nutrient solution containing 5 mM nitrogen. Distilled water was added daily as needed to maintain a constant nutrient volume. Nutrient solution was replaced weekly, and a pH of 5.8±0.3 was maintained by daily additions of 2N KOH or 2N HCl.
Extracted molecule total RNA
Extraction protocol CTAB protocol
Label biotin
Label protocol Affymetrix
 
Hybridization protocol Affymetrix
Scan protocol Affymetrix
Description Gene expression data from a 4-week N experiment
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Jan 22, 2009
Last update date Jan 04, 2010
Contact name Chung-Jui Tsai
E-mail(s) cjtsai@uga.edu
Organization name University of Georgia
Department School of Forestry and Natural Resources
Street address 120 Green Street
City Athens
State/province GA
ZIP/Postal code 30606
Country USA
 
Platform ID GPL4359
Series (3)
GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
GSE14894 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation
GSE16786 Populus stress response: nitrogen limitation, leaf wounding, and methyl jasmonate feeding of cell culture

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-3_at 2139.6 P 0.000044
AFFX-BioB-5_at 1886.7 P 0.000509
AFFX-BioB-M_at 3160 P 0.000052
AFFX-BioC-3_at 1578.4 P 0.000052
AFFX-BioC-5_at 1965.1 P 0.00006
AFFX-BioDn-3_at 25272.5 P 0.000044
AFFX-BioDn-5_at 14001.6 P 0.000044
AFFX-CreX-3_at 67618.6 P 0.000044
AFFX-CreX-5_at 58474.1 P 0.000052
AFFX-DapX-3_at 1862.1 P 0.00011
AFFX-DapX-5_at 540.8 P 0.00141
AFFX-DapX-M_at 1744 P 0.000225
AFFX-LysX-3_at 126.7 A 0.139482
AFFX-LysX-5_at 177.6 P 0.028457
AFFX-LysX-M_at 80.5 A 0.712257
AFFX-PheX-3_at 255.6 A 0.072682
AFFX-PheX-5_at 160.9 P 0.00844
AFFX-PheX-M_at 121.9 A 0.123572
AFFX-Ptp-actin-3_s_at 29313.7 P 0.000244
AFFX-Ptp-actin-5_a_at 14028.2 P 0.000244

Total number of rows: 61413

Table truncated, full table size 2306 Kbytes.




Supplementary file Size Download File type/resource
GSM362883.CEL.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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