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Status |
Public on Jan 21, 2009 |
Title |
small RNA from 1st instar larvae (1) |
Sample type |
SRA |
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Source name |
Drosophila melanogaster 1st instar larvae
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Organism |
Drosophila melanogaster |
Characteristics |
1st instar larvae
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Extracted molecule |
total RNA |
Extraction protocol |
total RNA from 1st instar larvae, ~18-26nt RNAs isolated using PAGE, ligation to adapters requires 5' monophosphate and 3' OH
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Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
size fractionation |
Instrument model |
Illumina Genome Analyzer |
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Description |
Small RNA data.
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Data processing |
raw sequences were clipped by 3' linker sequences recognition, and select clipped sequences longer than 18 nt
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Submission date |
Jan 14, 2009 |
Last update date |
Jun 11, 2013 |
Contact name |
Nicolas Robine |
E-mail(s) |
robinen@mskcc.org
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Organization name |
Memorial Sloan Kettering Cancer Center
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Department |
Developmental Biology
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Lab |
Eric Lai
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Street address |
1275 York Avenue, Box 252
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City |
New York |
State/province |
NY |
ZIP/Postal code |
10065 |
Country |
USA |
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Platform ID |
GPL9058 |
Series (1) |
GSE12840 |
Drosophila melanogaster late embryo, larval, pupal and adult head small RNA libraries |
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Relations |
BioSample |
SAMN02195577 |
Data table header descriptions |
SEQUENCE |
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COUNT |
number of times small RNA was sequenced |
Data table |
SEQUENCE |
COUNT |
GATTTGTCTAGTTAATTC |
1 |
CCCGAGAGCCTCCAACGTGGGT |
1 |
ATCGTCAAGGTTGCCCAGAAGAAC |
1 |
ACTCATATCCGAGGCCCTTTA |
1 |
ACTGAACGATATGGTTCGCTGATTCT |
1 |
GTTGTGTCGATATTTTCTCCTCG |
6 |
ATGTAAGCGTATTACCGGTGGTGTTTTTTGTTGT |
1 |
CCTGGTATTCCTGGTGCTCCC |
1 |
GACCAAGGAGTCTAACATATGTGCAAGTT |
1 |
GAATGATTAGAGGCCTTAGGGTCGA |
1 |
CGTAGTTGAACTTGTGCTTCAT |
842 |
TATTATGAGAATAGTGTGCATTTT |
36 |
GGCAAGGTGTTGTAAGTGGTTGTGGCTGTTGGTG |
1 |
ATAGAGCAAAAGGGCAAATGCTGA |
2 |
AAAAAGTGGCTGGCTTAGAT |
1 |
ATATCTTATGGTATTGGTTTTT |
1 |
ACGGGTAACGGGGAACTGTAGGGAGTATAAATCGT |
1 |
TGACGTACCGCGTCAAGGAGGGGAAGC |
1 |
GCCAGAGCGCGGTGATGTC |
1 |
AACGGGTAACGGGGAATCAGGTTGTGGGGACGATTA |
1 |
Total number of rows: 649027
Table truncated, full table size 16969 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GSM360256_fastq.txt.gz |
222.5 Mb |
(ftp)(http) |
TXT |
Processed data included within Sample table |
Raw data provided as supplementary file |
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