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Sample GSM359294 Query DataSets for GSM359294
Status Public on Dec 01, 2009
Title H3K27me3 Yaswen3A RenLab ENCODE PCR tiling array replicate 1 llee_enc_H3K27me3_Yaswen3A_031108.gpr
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA from Yaswen3A cells using H3K27me3 antibody
Organism Homo sapiens
Characteristics Chromatin immunoprecipitated DNA from Yaswen3A cells using H3K27me3 antibody
Extracted molecule genomic DNA
Extraction protocol GenePix
Label Cy5
Label protocol Cy3 input Cy5 ChIP sample
 
Channel 2
Source name Input DNA from Yaswen3A cells
Organism Homo sapiens
Characteristics Input DNA from Yaswen3A cells
Extracted molecule genomic DNA
Extraction protocol GenePix
Label Cy3
Label protocol Cy3 input Cy5 ChIP sample
 
 
Hybridization protocol GenePix
Scan protocol GenePix
Description ChIP-chip analyses were performed for various transcription factors and chromatin modifications in various cell types. Details to be described in publications.
Data processing raw data
 
Submission date Jan 09, 2009
Last update date Feb 19, 2009
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name University of California, San Diego
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL1454
Series (1)
GSE14436 P16INK4a mediated supperssion of telomerase in normal and malignant human breast cells

Data table header descriptions
ID_REF ID_REF
VALUE log2 ratio (F635/F532) with flagged values removed
STATISTICS statistics
PVAL p-value
F635_INT F635 intensity with background intensity subtracted (normalized)
F532_INT F532 intensity with background intensity subtracted (normalized)
F635_MEDIAN F635 mdian intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation
FLAG flag from GenePro, 0 is useful
UNF_VALUE log ratio (F635/F532)

Data table
ID_REF VALUE STATISTICS PVAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD FLAG UNF_VALUE
1 -0.272 0.81 8.803e-01 623.00 769.17 685 738 328 62 68 48 886 930 365 134 137 65 0 -0.272
2 -0.230 0.83 8.459e-01 637.00 764.05 699 739 322 62 68 49 874 914 369 127 130 61 0 -0.230
3 0.98 5.118e-01 10.00 10.23 61 66 46 64 70 49 132 136 63 132 133 62 -50 16.610
4 0.98 5.119e-01 10.00 10.23 65 71 53 64 70 49 137 139 56 129 131 60 -50 -3.000
5 -0.333 0.78 9.250e-01 835.00 1076.01 897 979 399 62 67 46 1181 1216 413 129 131 58 0 -0.333
6 -0.278 0.81 8.909e-01 1271.00 1576.17 1335 1290 558 64 69 48 1666 1595 600 125 130 59 0 -0.278
7 -0.322 0.78 9.172e-01 997.00 1274.44 1060 1057 476 63 68 50 1376 1353 540 130 136 65 0 -0.322
8 -0.256 0.82 8.770e-01 977.00 1193.64 1040 1069 398 63 69 51 1295 1346 385 128 132 62 0 -0.256
9 -0.315 0.79 9.156e-01 1076.00 1369.56 1139 1160 470 63 70 71 1461 1434 534 122 127 59 0 -0.315
10 -0.215 0.84 8.373e-01 1320.00 1566.97 1381 1383 565 61 70 78 1660 1669 621 128 131 58 0 -0.215
11 -0.203 0.85 8.231e-01 690.00 812.12 751 772 313 61 67 46 926 956 351 132 133 60 0 -0.203
12 -0.365 0.76 9.376e-01 604.00 795.76 665 719 351 61 68 47 907 904 331 129 134 60 0 -0.365
13 -0.071 0.93 6.658e-01 1110.00 1192.62 1173 1189 296 63 69 52 1294 1296 264 128 133 61 0 -0.071
14 -0.500 0.69 9.843e-01 1512.00 2187.83 1573 1598 378 61 67 51 2269 2214 481 130 133 58 0 -0.500
15 -0.135 0.89 7.539e-01 1054.00 1183.41 1114 1113 313 60 66 48 1291 1277 295 134 136 60 0 -0.135
16 0.305 1.21 1.310e-01 1976.00 1636.52 2038 2034 435 62 69 50 1731 1727 368 131 132 60 0 0.305
17 -0.233 0.83 8.601e-01 1099.00 1321.49 1160 1109 352 61 66 48 1420 1370 400 128 132 58 0 -0.233
18 -0.627 0.63 9.955e-01 1416.00 2236.92 1477 1463 447 61 68 50 2317 2241 532 130 133 59 0 -0.627
19 0.98 5.120e-01 10.00 10.23 61 65 48 60 67 51 131 133 60 136 141 63 -50 0
20 0.104 1.05 3.834e-01 1336.00 1271.37 1399 1374 341 63 67 48 1381 1391 263 138 141 62 0 0.104

Total number of rows: 25246

Table truncated, full table size 2319 Kbytes.




Supplementary file Size Download File type/resource
GSM359294.gpr.gz 2.4 Mb (ftp)(http) GPR
Processed data included within Sample table
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